Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma von Robertson, A. Gordon, Gibb, Ewan A., Oba, Junna, Uzunangelov, Vladislav, Walter, Vonn, Danilova, Ludmila, Kimes, Patrick K., Babur, Ozgun, Akbani, Rehan, Bristow, Christopher A., Iype, Lisa, Beroukhim, Rameen, Bowen, Jay, Bowlby, Reanne, Bristow, Christopher A., Carlsen, Rebecca, Cebulla, Colleen M., Chin, Lynda, Chuah, Eric, Chudamani, Sudha, Cibulskis, Carrie, Cibulskis, Kristian, Cope, Leslie, Coupland, Sarah E., Defreitas, Timothy, Demchok, John A., Desjardins, Laurence, Esmaeli, Bita, Felau, Ina, Ferguson, Martin L., Frazer, Scott, Gehlenborg, Nils, Gerken, Mark, Getz, Gad, Gibb, Ewan A., Griewank, Klaus G., Heiman, David I., Helsel, Carmen, Hu, Xin, Jefferys, Stuart R., Leraas, Kristen M., Lichtenberg, Tara M., Liu, Jia, Iype, Lisa, Ma, Yussanne, Mariani, Odette, Marra, Marco A., Meier, Sam, Meyerson, Matthew, Mungall, Andrew J., Mungall, Karen L., Murray, Bradley A., Naresh, Rashi, Oba, Junna, Pantazi, Angeliki, Parfenov, Michael, Park, Peter J., Protopopov, Alexei, Radenbaugh, Amie, Rai, Karan, Ramirez, Nilsa C., Ren, Xiaojia, Reynolds, Sheila M., Roach, Jeffrey, Robertson, A. Gordon, Schadendorf, Dirk, Schumacher, Steven E., Seidman, Jonathan, Seth, Sahil, Sethi, Geetika, Sheth, Margi, Shi, Yan, Singh, Arun D., Sipahimalani, Payal, Soloway, Matthew G., Sun, Huandong, Tan, Donghui, Tang, Ming, Tse, Kane, Uzunangelov, Vladislav, Verhaak, Roel G.W., Walter, Vonn, Wan, Yunhu, Weinstein, John N., Williams, Michelle D., Woodman, Scott E., Yang, Liming, Yang, Lixing, Yau, Christina, Zhang, Hailei, Zmuda, Erik, Benz, Christopher, Mills, Gordon B., Verhaak, Roel G.W., Gershenwald, Jeffrey E., Schoenfield, Lynn, Abdel-Rahman, Mohamed H., Stern, Marc-Henri, Cebulla, Colleen M., Woodman, Scott E.

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Carboplatin in BRCA1/2-mutated and triple-negative breast cancer BRCAness subgroups: the TNT Trial von Tutt, Andrew, Tovey, Holly, Cheang, Maggie Chon U., Kernaghan, Sarah, Kilburn, Lucy, Gazinska, Patrycja, Owen, Julie, Abraham, Jacinta, Barrett, Sophie, Barrett-Lee, Peter, Brown, Robert, Chan, Stephen, Dowsett, Mitchell, Flanagan, James M, Fox, Lisa, Grigoriadis, Anita, Gutin, Alexander, Harper-Wynne, Catherine, Hatton, Matthew Q., Hoadley, Katherine A., Parikh, Jyoti, Parker, Peter, Perou, Charles M., Roylance, Rebecca, Shah, Vandna, Shaw, Adam, Smith, Ian E., Timms, Kirsten M., Wardley, Andrew M., Wilson, Gregory, Gillett, Cheryl, Lanchbury, Jerry S., Ashworth, Alan, Rahman, Nazneen, Harries, Mark, Ellis, Paul, Pinder, Sarah E., Bliss, Judith M.

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MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays von Li, Hui, Zhu, Yitan, Burnside, Elizabeth S, Drukker, Karen, Hoadley, Katherine A, Fan, Cheng, Conzen, Suzanne D, Whitman, Gary J, Sutton, Elizabeth J, Net, Jose M, Ganott, Marie, Huang, Erich, Morris, Elizabeth A, Perou, Charles M, Ji, Yuan, Giger, Maryellen L

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Intrinsic subtypes of high-grade bladder cancer reflect the hallmarks of breast cancer biology von Damrauer, Jeffrey S., Hoadley, Katherine A., Chism, David D., Fan, Cheng, Tiganelli, Christopher J., Wobker, Sara E., Yeh, Jen Jen, Milowsky, Matthew I., Iyer, Gopa, Parker, Joel S., Kim, William Y.

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Oncometabolite D-2-Hydroxyglutarate Inhibits ALKBH DNA Repair Enzymes and Sensitizes IDH Mutant Cells to Alkylating Agents von Wang, Pu, Wu, Jing, Ma, Shenghong, Zhang, Lei, Yao, Jun, Hoadley, Katherine A., Wilkerson, Matthew D., Perou, Charles M., Guan, Kun-Liang, Ye, Dan, Xiong, Yue

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JOINT AND INDIVIDUAL VARIATION EXPLAINED (JIVE) FOR INTEGRATED ANALYSIS OF MULTIPLE DATA TYPES von Lock, Eric F., Hoadley, Katherine A., Marron, J. S., Nobel, Andrew B.

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FOXM1 Deubiquitination by USP21 Regulates Cell Cycle Progression and Paclitaxel Sensitivity in Basal-like Breast Cancer von Arceci, Anthony, Bonacci, Thomas, Wang, Xianxi, Stewart, Kyle, Damrauer, Jeffrey S., Hoadley, Katherine A., Emanuele, Michael J.

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A hierarchical spike-and-slab model for pan-cancer survival using pan-omic data von Samorodnitsky, Sarah, Hoadley, Katherine A, Lock, Eric F

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TBCRC 001: Randomized Phase II Study of Cetuximab in Combination With Carboplatin in Stage IV Triple-Negative Breast Cancer von CAREY, Lisa A, RUGO, Hope S, WOLFF, Antonio C, HOBDAY, Timothy J, IVANOVA, Anastasia, CHIU, Wing-Keung, FERRARO, Madlyn, BURROWS, Emily, BERNARD, Philip S, HOADLEY, Katherine A, PEROU, Charles M, WINER, Eric P, MARCOM, P. Kelly, MAYER, Erica L, ESTEVA, Francisco J, MA, Cynthia X, LIU, Minetta C, STORNIOLO, Anna Maria, RIMAWI, Mothaffar F, FORERO-TORRES, Andres

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Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1 von Verhaak, Roel G.W., Hoadley, Katherine A., Purdom, Elizabeth, Wang, Victoria, Qi, Yuan, Wilkerson, Matthew D., Miller, C. Ryan, Ding, Li, Golub, Todd, Mesirov, Jill P., Alexe, Gabriele, Lawrence, Michael, O'Kelly, Michael, Tamayo, Pablo, Weir, Barbara A., Gabriel, Stacey, Winckler, Wendy, Gupta, Supriya, Jakkula, Lakshmi, Feiler, Heidi S., Hodgson, J. Graeme, James, C. David, Sarkaria, Jann N., Brennan, Cameron, Kahn, Ari, Spellman, Paul T., Wilson, Richard K., Speed, Terence P., Gray, Joe W., Meyerson, Matthew, Getz, Gad, Perou, Charles M., Hayes, D. Neil

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Dynamic Reprogramming of the Kinome in Response to Targeted MEK Inhibition in Triple-Negative Breast Cancer von Duncan, James S., Whittle, Martin C., Nakamura, Kazuhiro, Abell, Amy N., Midland, Alicia A., Zawistowski, Jon S., Johnson, Nancy L., Granger, Deborah A., Jordan, Nicole Vincent, Darr, David B., Usary, Jerry, Kuan, Pei-Fen, Smalley, David M., Major, Ben, He, Xiaping, Hoadley, Katherine A., Zhou, Bing, Sharpless, Norman E., Perou, Charles M., Kim, William Y., Gomez, Shawn M., Chen, Xin, Jin, Jian, Frye, Stephen V., Earp, H. Shelton, Graves, Lee M., Johnson, Gary L.

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Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer von Siegel, Marni B, He, Xiaping, Hoadley, Katherine A, Hoyle, Alan, Pearce, Julia B, Garrett, Amy L, Kumar, Sunil, Moylan, Vincent J, Brady, Claudia M, Van Swearingen, Amanda Ed, Marron, David, Gupta, Gaorav P, Thorne, Leigh B, Kieran, Niamh, Livasy, Chad, Mardis, Elaine R, Parker, Joel S, Chen, Mengjie, Anders, Carey K, Carey, Lisa A, Perou, Charles M

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The Immune Microenvironment in Hormone Receptor-Positive Breast Cancer Before and After Preoperative Chemotherapy von Waks, Adrienne G, Stover, Daniel G, Guerriero, Jennifer L, Dillon, Deborah, Barry, William T, Gjini, Evisa, Hartl, Christina, Lo, Wesley, Savoie, Jennifer, Brock, Jane, Wesolowski, Robert, Li, Zaibo, Damicis, Adrienne, Philips, Anne V, Wu, Yun, Yang, Fei, Sullivan, Amy, Danaher, Patrick, Brauer, Heather Ann, Osmani, Wafa, Lipschitz, Mikel, Hoadley, Katherine A, Goldberg, Michael, Perou, Charles M, Rodig, Scott, Winer, Eric P, Krop, Ian E, Mittendorf, Elizabeth A, Tolaney, Sara M

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Tumor mutational burden is a determinant of immune-mediated survival in breast cancer von Thomas, Alexandra, Routh, Eric D., Pullikuth, Ashok, Jin, Guangxu, Su, Jing, Chou, Jeff W., Hoadley, Katherine A., Print, Cristin, Knowlton, Nick, Black, Michael A., Demaria, Sandra, Wang, Ena, Bedognetti, Davide, Jones, Wendell D., Mehta, Gaurav A., Gatza, Michael L., Perou, Charles M., Page, David B., Triozzi, Pierre, Miller, Lance D.

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Gain-of-Function RHOA Mutations Promote Focal Adhesion Kinase Activation and Dependency in Diffuse Gastric Cancer von Zhang, Haisheng, Schaefer, Antje, Wang, Yichen, Hodge, Richard G., Blake, Devon R., Diehl, J. Nathaniel, Papageorge, Alex G., Stachler, Matthew D., Liao, Jennifer, Zhou, Jin, Wu, Zhong, Akarca, Fahire G., de Klerk, Leonie K., Derks, Sarah, Pierobon, Mariaelena, Hoadley, Katherine A., Wang, Timothy C., Church, George, Wong, Kwok-Kin, Petricoin, Emanuel F., Cox, Adrienne D., Lowy, Douglas R., Der, Channing J., Bass, Adam J.

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Prognostic value of B cells in cutaneous melanoma von Selitsky, Sara R, Mose, Lisle E, Smith, Christof C, Chai, Shengjie, Hoadley, Katherine A, Dittmer, Dirk P, Moschos, Stergios J, Parker, Joel S, Vincent, Benjamin G

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Genetic determinants of the molecular portraits of epithelial cancers von Xia, Youli, Fan, Cheng, Hoadley, Katherine A., Parker, Joel S., Perou, Charles M.

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Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set von Li, Hui, Zhu, Yitan, Burnside, Elizabeth S, Huang, Erich, Drukker, Karen, Hoadley, Katherine A, Fan, Cheng, Conzen, Suzanne D, Zuley, Margarita, Net, Jose M, Sutton, Elizabeth, Whitman, Gary J, Morris, Elizabeth, Perou, Charles M, Ji, Yuan, Giger, Maryellen L

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Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes von Walter, Vonn, Yin, Xiaoying, Wilkerson, Matthew D, Cabanski, Christopher R, Zhao, Ni, Du, Ying, Ang, Mei Kim, Hayward, Michele C, Salazar, Ashley H, Hoadley, Katherine A, Fritchie, Karen, Sailey, Charles J, Sailey, Charles G, Weissler, Mark C, Shockley, William W, Zanation, Adam M, Hackman, Trevor, Thorne, Leigh B, Funkhouser, William D, Muldrew, Kenneth L, Olshan, Andrew F, Randell, Scott H, Wright, Fred A, Shores, Carol G, Hayes, D Neil

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Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases von Hoadley, Katherine A, Siegel, Marni B, Kanchi, Krishna L, Miller, Christopher A, Ding, Li, Zhao, Wei, He, Xiaping, Parker, Joel S, Wendl, Michael C, Fulton, Robert S, Demeter, Ryan T, Wilson, Richard K, Carey, Lisa A, Perou, Charles M, Mardis, Elaine R

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