Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury von Farbehi, Nona, Patrick, Ralph, Dorison, Aude, Xaymardan, Munira, Janbandhu, Vaibhao, Wystub-Lis, Katharina, Ho, Joshua Wk, Nordon, Robert E, Harvey, Richard P

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An innovative approach for testing bioinformatics programs using metamorphic testing von Chen, Tsong Yueh, Ho, Joshua W K, Liu, Huai, Xie, Xiaoyuan

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ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis von Ho, Joshua W K, Bishop, Eric, Karchenko, Peter V, Nègre, Nicolas, White, Kevin P, Park, Peter J

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Effect of machine learning re-sampling techniques for imbalanced datasets in 18F-FDG PET-based radiomics model on prognostication performance in cohorts of head and neck cancer pat... von Xie, Chenyi, Du, Richard, Ho, Joshua WK, Pang, Herbert H, Chiu, Keith WH, Lee, Elaine YP, Vardhanabhuti, Varut

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Gene-gene interaction filtering with ensemble of filters von Yang, Pengyi, Ho, Joshua Wk, Yang, Yee Hwa, Zhou, Bing B

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Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie von Giannoulatou, Eleni, Park, Shin-Ho, Humphreys, David T, Ho, Joshua W K

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A genetic ensemble approach for gene-gene interaction identification von Yang, Pengyi, Ho, Joshua W K, Zomaya, Albert Y, Zhou, Bing B

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Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site von Al-Zyoud, Walid A, Hynson, Robert M G, Ganuelas, Lorraine A, Coster, Adelle C F, Duff, Anthony P, Baker, Matthew A B, Stewart, Alastair G, Giannoulatou, Eleni, Ho, Joshua W K, Gaus, Katharina, Liu, Dali, Lee, Lawrence K, Böcking, Till

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Testing and validating machine learning classifiers by metamorphic testing von Xie, Xiaoyuan, Ho, Joshua W.K., Murphy, Christian, Kaiser, Gail, Xu, Baowen, Chen, Tsong Yueh

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NAD Deficiency, Congenital Malformations, and Niacin Supplementation von Shi, Hongjun, Enriquez, Annabelle, Rapadas, Melissa, Martin, Ella M.M.A, Wang, Roni, Moreau, Julie, Lim, Chai K, Szot, Justin O, Ip, Eddie, Hughes, James N, Sugimoto, Kotaro, Humphreys, David T, McInerney-Leo, Aideen M, Leo, Paul J, Maghzal, Ghassan J, Halliday, Jake, Smith, Janine, Colley, Alison, Mark, Paul R, Collins, Felicity, Sillence, David O, Winlaw, David S, Ho, Joshua W.K, Guillemin, Gilles J, Brown, Matthew A, Kikuchi, Kazu, Thomas, Paul Q, Stocker, Roland, Giannoulatou, Eleni, Chapman, Gavin, Duncan, Emma L, Sparrow, Duncan B, Dunwoodie, Sally L

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A model selection approach to discover age-dependent gene expression patterns using quantile regression models von Ho, Joshua W K, Stefani, Maurizio, dos Remedios, Cristobal G, Charleston, Michael A

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Lineage tracing and single-cell analysis reveal proliferative Prom1+ tumour-propagating cells and their dynamic cellular transition during liver cancer progression von Zhou, Lei, Yu, Ken HO, Wong, Tin Lok, Zhang, Zhao, Chan, Chun Ho, Loong, Jane HC, Che, Noelia, Yu, Hua Jian, Tan, Kel Vin, Tong, Man, Ngan, Elly S, Ho, Joshua WK, Ma, Stephanie

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A voting approach to identify a small number of highly predictive genes using multiple classifiers von Hassan, Md Rafiul, Hossain, M Maruf, Bailey, James, Macintyre, Geoff, Ho, Joshua W K, Ramamohanarao, Kotagiri

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Targeted Next-Generation Sequencing Identifies Pathogenic Variants in Familial Congenital Heart Disease von Blue, Gillian M., MSc, Kirk, Edwin P., MBBS, PhD, Giannoulatou, Eleni, MEng, MPhil, DPhil, Dunwoodie, Sally L., PhD, Ho, Joshua W.K., PhD, Hilton, Desiree C.K., PhD, White, Susan M., MBBS, Sholler, Gary F., MBBS (Hons), Harvey, Richard P., PhD, Winlaw, David S., MBBS, MD

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A Screening Approach to Identify Clinically Actionable Variants Causing Congenital Heart Disease in Exome Data von Szot, Justin O, Cuny, Hartmut, Blue, Gillian M, Humphreys, David T, Ip, Eddie, Harrison, Katrina, Sholler, Gary F, Giannoulatou, Eleni, Leo, Paul, Duncan, Emma L, Sparrow, Duncan B, Ho, Joshua W K, Graham, Robert M, Pachter, Nicholas, Chapman, Gavin, Winlaw, David S, Dunwoodie, Sally L

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Impact of sequencing depth in ChIP-seq experiments von Jung, Youngsook L., Luquette, Lovelace J., Ho, Joshua W.K., Ferrari, Francesco, Tolstorukov, Michael, Minoda, Aki, Issner, Robbyn, Epstein, Charles B., Karpen, Gary H., Kuroda, Mitzi I., Park, Peter J.

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Lung Stem Cell Self-Renewal Relies on BMI1-Dependent Control of Expression at Imprinted Loci von Zacharek, Sima J., Fillmore, Christine M., Lau, Allison N., Gludish, David W., Chou, Alan, Ho, Joshua W.K., Zamponi, Raffaella, Gazit, Roi, Bock, Christoph, Jäger, Natalie, Smith, Zachary D., Kim, Tae-min, Saunders, Arven H., Wong, Janice, Lee, Joo-Hyeon, Roach, Rebecca R., Rossi, Derrick J., Meissner, Alex, Gimelbrant, Alexander A., Park, Peter J., Kim, Carla F.

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PD-L1 regulates inflammatory programs of macrophages from human pluripotent stem cells von Cao, Handi, Xiang, Yang, Zhang, Shihui, Chao, Yiming, Guo, Jilong, Aurich, Theo, Ho, Joshua Wk, Huang, Yuanhua, Liu, Pentao, Sugimura, Ryohichi

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Effect of machine learning re-sampling techniques for imbalanced datasets in 18 F-FDG PET-based radiomics model on prognostication performance in cohorts of head and neck cancer pa... von Xie, Chenyi, Du, Richard, Ho, Joshua Wk, Pang, Herbert H, Chiu, Keith Wh, Lee, Elaine Yp, Vardhanabhuti, Varut

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How to test bioinformatics software? von Kamali, Amir Hossein, Giannoulatou, Eleni, Chen, Tsong Yueh, Charleston, Michael A., McEwan, Alistair L., Ho, Joshua W. K.

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