Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family von Lagkouvardos, Ilias, Lesker, Till R, Hitch, Thomas C A, Gálvez, Eric J C, Smit, Nathiana, Neuhaus, Klaus, Wang, Jun, Baines, John F, Abt, Birte, Stecher, Bärbel, Overmann, Jörg, Strowig, Till, Clavel, Thomas

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Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle von Li, Fuyong, Hitch, Thomas C A, Chen, Yanhong, Creevey, Christopher J, Guan, Le Luo

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Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria von Hitch, Thomas C A, Riedel, Thomas, Oren, Aharon, Overmann, Jörg, Lawley, Trevor D, Clavel, Thomas

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Spherical: an iterative workflow for assembling metagenomic datasets von Hitch, Thomas C A, Creevey, Christopher J

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Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria von Zenner, Christian, Hitch, Thomas C. A., Riedel, Thomas, Wortmann, Esther, Tiede, Stefan, Buhl, Eva M., Abt, Birte, Neuhaus, Klaus, Velge, Philippe, Overmann, Joerg, Kaspers, Bernd, Clavel, Thomas

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Microbiome-based interventions to modulate gut ecology and the immune system von Hitch, Thomas C. A., Hall, Lindsay J., Walsh, Sarah Kate, Leventhal, Gabriel E., Slack, Emma, de Wouters, Tomas, Walter, Jens, Clavel, Thomas

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Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteria von Afrizal, Afrizal, Hitch, Thomas C. A., Viehof, Alina, Treichel, Nicole, Riedel, Thomas, Abt, Birte, Buhl, Eva M., Kohlheyer, Dietrich, Overmann, Jörg, Clavel, Thomas

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A proposed update for the classification and description of bacterial lipolytic enzymes von Hitch, Thomas C A, Clavel, Thomas

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Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling von Reitmeier, Sandra, Hitch, Thomas C A, Treichel, Nicole, Fikas, Nikolaos, Hausmann, Bela, Ramer-Tait, Amanda E, Neuhaus, Klaus, Berry, David, Haller, Dirk, Lagkouvardos, Ilias, Clavel, Thomas

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MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes von Kumar, Neeraj, Hitch, Thomas C. A., Haller, Dirk, Lagkouvardos, Ilias, Clavel, Thomas

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Upregulation of Anti-Oxidative Stress Response Improves Metabolic Changes in L-Selectin-Deficient Mice but Does Not Prevent NAFLD Progression or Fecal Microbiota Shifts von Eswaran, Sreepradha, Babbar, Anshu, Drescher, Hannah K., Hitch, Thomas C. A., Clavel, Thomas, Muschaweck, Moritz, Ritz, Thomas, Kroy, Daniela C., Trautwein, Christian, Wagner, Norbert, Schippers, Angela

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Rumen Virus Populations: Technological Advances Enhancing Current Understanding von Gilbert, Rosalind A., Townsend, Eleanor M., Crew, Kathleen S., Hitch, Thomas C. A., Friedersdorff, Jessica C. A., Creevey, Christopher J., Pope, Phillip B., Ouwerkerk, Diane, Jameson, Eleanor

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Naturalizing laboratory mice by housing in a farmyard-type habitat confers protection against colorectal carcinogenesis von Arnesen, Henriette, Hitch, Thomas C. A., Steppeler, Christina, Müller, Mette Helen Bjørge, Knutsen, Linn Emilie, Gunnes, Gjermund, Angell, Inga Leena, Ormaasen, Ida, Rudi, Knut, Paulsen, Jan Erik, Clavel, Thomas, Carlsen, Harald, Boysen, Preben

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The Compromised Mucosal Immune System of β7 Integrin-Deficient Mice Has Only Minor Effects on the Fecal Microbiota in Homeostasis von Babbar, Anshu, Hitch, Thomas C. A., Pabst, Oliver, Clavel, Thomas, Hübel, Jessica, Eswaran, Sreepradha, Wagner, Norbert, Schippers, Angela

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High microbiota reactivity of adult human intestinal IgA requires somatic mutations von Kabbert, Johanna, Benckert, Julia, Rollenske, Tim, Hitch, Thomas C. A., Clavel, Thomas, Cerovic, Vuk, Wardemann, Hedda, Pabst, Oliver

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A taxonomic note on the genus Prevotella: Description of four novel genera and emended description of the genera Hallella and Xylanibacter von Hitch, Thomas C.A., Bisdorf, Kevin, Afrizal, Afrizal, Riedel, Thomas, Overmann, Jörg, Strowig, Till, Clavel, Thomas

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Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities von Afrizal, Afrizal, Jennings, Susan A.V., Hitch, Thomas C.A., Riedel, Thomas, Basic, Marijana, Panyot, Atscharah, Treichel, Nicole, Hager, Fabian T., Wong, Erin Oi-Yan, Wolter, Birger, Viehof, Alina, von Strempel, Alexandra, Eberl, Claudia, Buhl, Eva M., Abt, Birte, Bleich, André, Tolba, René, Blank, Lars M., Navarre, William W., Kiessling, Fabian, Horz, Hans-Peter, Torow, Natalia, Cerovic, Vuk, Stecher, Bärbel, Strowig, Till, Overmann, Jörg, Clavel, Thomas

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Deep sequence analysis reveals the ovine rumen as a reservoir of antibiotic resistance genes von Hitch, Thomas C.A., Thomas, Ben J., Friedersdorff, Jessica C.A., Ougham, Helen, Creevey, Christopher J.

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Recent advances in culture-based gut microbiome research von Hitch, Thomas C.A., Afrizal, Afrizal, Riedel, Thomas, Kioukis, Antonios, Haller, Dirk, Lagkouvardos, Ilias, Overmann, Jörg, Clavel, Thomas

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Harmonious naming across nomenclature codes exemplified by the description of bacterial isolates from the mammalian gut von Hitch, Thomas C.A., Wylensek, David, Bisdorf, Kevin, Buhl, Eva M., Treichel, Nicole, Abt, Birte, Overmann, Jörg, Clavel, Thomas

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