Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes von Chong, Chloe, Müller, Markus, Pak, HuiSong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J., Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simó-Riudalbas, Laia, Planet, Evarist, Lubiński, Jan, Bryśkiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal

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Quantification of translation uncovers the functions of the alternative transcriptome von Calviello, Lorenzo, Hirsekorn, Antje, Ohler, Uwe

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Detecting actively translated open reading frames in ribosome profiling data von Calviello, Lorenzo, Mukherjee, Neelanjan, Wyler, Emanuel, Zauber, Henrik, Hirsekorn, Antje, Selbach, Matthias, Landthaler, Markus, Obermayer, Benedikt, Ohler, Uwe

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Integrative classification of human coding and noncoding genes through RNA metabolism profiles von Mukherjee, Neelanjan, Calviello, Lorenzo, Hirsekorn, Antje, de Pretis, Stefano, Pelizzola, Mattia, Ohler, Uwe

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Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling von Karabacak Calviello, Aslıhan, Hirsekorn, Antje, Wurmus, Ricardo, Yusuf, Dilmurat, Ohler, Uwe

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Global identification of functional microRNA-mRNA interactions in Drosophila von Wessels, Hans-Hermann, Lebedeva, Svetlana, Hirsekorn, Antje, Wurmus, Ricardo, Akalin, Altuna, Mukherjee, Neelanjan, Ohler, Uwe

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FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells von Kolundzic, Ena, Ofenbauer, Andreas, Bulut, Selman I., Uyar, Bora, Baytek, Gülkiz, Sommermeier, Anne, Seelk, Stefanie, He, Mei, Hirsekorn, Antje, Vucicevic, Dubravka, Akalin, Altuna, Diecke, Sebastian, Lacadie, Scott A., Tursun, Baris

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A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells von Velasco, Silvia, Ibrahim, Mahmoud M., Kakumanu, Akshay, Garipler, Görkem, Aydin, Begüm, Al-Sayegh, Mohamed Ahmed, Hirsekorn, Antje, Abdul-Rahman, Farah, Satija, Rahul, Ohler, Uwe, Mahony, Shaun, Mazzoni, Esteban O.

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Determinants of promoter and enhancer transcription directionality in metazoans von Ibrahim, Mahmoud M., Karabacak, Aslihan, Glahs, Alexander, Kolundzic, Ena, Hirsekorn, Antje, Carda, Alexa, Tursun, Baris, Zinzen, Robert P., Lacadie, Scott A., Ohler, Uwe

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Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus von Baskaran, Praveen, Rödelsperger, Christian, Prabh, Neel, Serobyan, Vahan, Markov, Gabriel V, Hirsekorn, Antje, Dieterich, Christoph

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Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos von McGarvey, Alison C., Kopp, Wolfgang, Vučićević, Dubravka, Mattonet, Kenny, Kempfer, Rieke, Hirsekorn, Antje, Bilić, Ilija, Gil, Marine, Trinks, Alexandra, Merks, Anne Margarete, Panáková, Daniela, Pombo, Ana, Akalin, Altuna, Junker, Jan Philipp, Stainier, Didier Y.R., Garfield, David, Ohler, Uwe, Lacadie, Scott Allen

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RNA-binding proteins regulate aldosterone homeostasis in human steroidogenic cells von Fu, Rui, Wellman, Kimberly, Baldwin, Amber, Rege, Juilee, Walters, Kathryn, Hirsekorn, Antje, Riemondy, Kent, Rainey, William E., Mukherjee, Neelanjan

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Identifying RBP Targets with RIP-seq von Wessels, Hans-Herman, Hirsekorn, Antje, Ohler, Uwe, Mukherjee, Neelanjan

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Additional file 1 of Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus von Baskaran, Praveen, Rรถdelsperger, Christian, Prabh, Neel, Serobyan, Vahan, Markov, Gabriel, Hirsekorn, Antje, Dieterich, Christoph

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Additional file 2 of Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus von Baskaran, Praveen, Rรถdelsperger, Christian, Prabh, Neel, Serobyan, Vahan, Markov, Gabriel, Hirsekorn, Antje, Dieterich, Christoph

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Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes von Chong, Chloe, Müller, Markus, Pak, HuiSong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J, Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simó-Riudalbas, Laia, Planet, Evarist, Lubiński, Jan, Bryśkiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal

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PROCESS FOR PRODUCING AN INTRAMOLECULAR DIESTER OF A HYDROXYCARBOXYLIC ACID AND PROCESS FOR PRODUCING A POLYHYDROXYCARBOXYLIC ACID von JESSE, Kathrin, LIESKE, Antje, HIRSEKORN, Max

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PROCESS FOR PRODUCING AN INTRAMOLECULAR DIESTER OF A HYDROXYCARBOXYLIC ACID AND PROCESS FOR PRODUCING A POLYHYDROXYCARBOXYLIC ACID von JESSE, Kathrin, LIESKE, Antje, HIRSEKORN, Max

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Process for producing an intramolecular diester of a hydroxycarboxylic acid and process for producing a polyhydroxycarboxylic acid von Jesse, Kathrin, Lieske, Antje, Hirsekorn, Max

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PROCESS FOR PRODUCING AN INTRAMOLECULAR DIESTER OF A HYDROXYCARBOXYLIC ACID AND PROCESS FOR PRODUCING A POLYHYDROXYCARBOXYLIC ACID von JESSE, Kathrin, LIESKE, Antje, HIRSEKORN, Max

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