Bridging scales through multiscale modeling: a case study on protein kinase A von Boras, Britton W, Hirakis, Sophia P, Votapka, Lane W, Malmstrom, Robert D, Amaro, Rommie E, McCulloch, Andrew D

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Electrophysical cardiac remodeling at the molecular level: Insights into ryanodine receptor activation and calcium-induced calcium release from a stochastic explicit-particle model von Hirakis, Sophia P., Bartol, Thomas M., Autin, Ludovic, Amaro, Rommie E., Sejnowski, Terrence J.

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Multiscale computational modeling of the effects of 2’-deoxy-ATP on cardiac muscle calcium handling von Hock, Marcus T., Teitgen, Abigail E., McCabe, Kimberly J., Hirakis, Sophia P., Huber, Gary A., Regnier, Michael, Amaro, Rommie E., McCammon, J. Andrew, McCulloch, Andrew D.

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Role of the αC-β4 loop in protein kinase structure and dynamics von Wu, Jian, Jonniya, Nisha A, Hirakis, Sophia P, Olivieri, Cristina, Veglia, Gianluigi, Kornev, Alexandr P, Taylor, Susan S

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Molecular Simulations Reveal an Unresolved Conformation of the Type IA Protein Kinase A Regulatory Subunit and Suggest Its Role in the cAMP Regulatory Mechanism von Hirakis, Sophia P, Malmstrom, Robert D, Amaro, Rommie E

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Synthesis of the Commercial Fragrance Compound Ethyl 6‑Acetoxyhexanoate: A Multistep Ester Experiment for the Second-Year Organic Laboratory von McCullagh, James V, Hirakis, Sophia P

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Erratum: Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein von Buffalo, Cosmo Z., Bahn-Suh, Adrian J., Hirakis, Sophia P., Biswas, Tapan, Amaro, Rommie E., Nizet, Victor, Ghosh, Partho

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Where cryo-electron and computational microscopy converge: The story of the elusive flipback conformation of protein kinase A and its critical role in phosphodiesterase cyclic AMP... von Hirakis, Sophia P., Venkatakrishnan, Varun, Brotzakis, Zacharias Faidon, Wu, Jian, Huber, Gary, Taylor, Susan S., Anand, Ganesh S.

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Role of the [alpha]C-[beta]4 loop in protein kinase structure and dynamics von Wu, Jian, Jonniya, Nisha A, Hirakis, Sophia P, Olivieri, Cristina, Veglia, Gianluigi, Kornev, Alexandr P, Taylor, Susan S

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Molecular simulations reveal an unresolved conformation of the Type-IA Protein Kinase A regulatory subunit and suggests its role in the cAMP regulatory mechanism von Hirakis, Sophia P., Malmstrom, Robert D., Amaro, Rommie E.

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Exploring the Effects of 2.Deoxy-ATP on SERCA 2A using Multiscale Modeling von McCabe, Kimberly J., Hirakis, Sophia P., Teitgen, Abigail E., Duclos, Alexandre B., Regnier, Michael, Amaro, Rommie E., McCulloch, Andrew D.

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Molecules to Membranes: The Calcium Release Unit von Hirakis, Sophia P., Bartol, Thomas M., Sejnowski, Terrence J., Amaro, Rommie E.

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Particle-Based Approaches to Clearing Calcium: a Protein Landscape Model of the Sarco/Endoplasmic Reticulum Calcium-ATPase (SERCA) Pump for Sub-Cellular Stochastic Models von Hirakis, Sophia P., Bartol, Thomas M., Sejnowski, Terrence J., Amaro, Rommie E.

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