Genomic Analysis of Plasmodium vivax in Southern Ethiopia Reveals Selective Pressures in Multiple Parasite Mechanisms von Auburn, Sarah, Getachew, Sisay, Pearson, Richard D., Amato, Roberto, Miotto, Olivo, Trimarsanto, Hidayat, Zhu, Sha Joe, Rumaseb, Angela, Marfurt, Jutta, Noviyanti, Rintis, Grigg, Matthew J., Barber, Bridget, William, Timothy, Goncalves, Sonia Morgado, Drury, Eleanor, Sriprawat, Kanlaya, Anstey, Nicholas M., Nosten, Francois, Petros, Beyene, Aseffa, Abraham, McVean, Gil, Kwiatkowski, Dominic P., Price, Ric N.

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Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics von Auburn, Sarah, Benavente, Ernest D., Miotto, Olivo, Pearson, Richard D., Amato, Roberto, Grigg, Matthew J., Barber, Bridget E., William, Timothy, Handayuni, Irene, Marfurt, Jutta, Trimarsanto, Hidayat, Noviyanti, Rintis, Sriprawat, Kanlaya, Nosten, Francois, Campino, Susana, Clark, Taane G., Anstey, Nicholas M., Kwiatkowski, Dominic P., Price, Ric N.

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Clinical and virological characteristics of dengue in Surabaya, Indonesia von Wardhani, Puspa, Aryati, Aryati, Yohan, Benediktus, Trimarsanto, Hidayat, Setianingsih, Tri Y, Puspitasari, Dwiyanti, Arfijanto, Muhammad Vitanata, Bramantono, Bramantono, Suharto, Suharto, Sasmono, R Tedjo

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Lineage-informative microhaplotypes for recurrence classification and spatio-temporal surveillance of Plasmodium vivax malaria parasites von Siegel, Sasha V., Trimarsanto, Hidayat, Amato, Roberto, Murie, Kathryn, Taylor, Aimee R., Sutanto, Edwin, Kleinecke, Mariana, Whitton, Georgia, Watson, James A., Imwong, Mallika, Assefa, Ashenafi, Rahim, Awab Ghulam, Nguyen, Hoang Chau, Tran, Tinh Hien, Green, Justin A., Koh, Gavin C. K. W., White, Nicholas J., Day, Nicholas, Kwiatkowski, Dominic P., Rayner, Julian C., Price, Ric N., Auburn, Sarah

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Genomics of Plasmodium vivax in Colombia reveals evidence of local bottle-necking and inter-country connectivity in the Americas von Sutanto, Edwin, Pava, Zuleima, Echeverry, Diego F., Lopera-Mesa, Tatiana M., Montenegro, Lidia Madeline, Yasnot-Acosta, Maria F., Benavente, Ernest Diez, Pearson, Richard D., Herrera, Sócrates, Arévalo-Herrera, Myriam, Trimarsanto, Hidayat, Rumaseb, Angela, Noviyanti, Rintis, Kwiatkowski, Dominic P., Price, Ric N., Auburn, Sarah

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Implementing parasite genotyping into national surveillance frameworks: feedback from control programmes and researchers in the Asia-Pacific region von Noviyanti, Rintis, Miotto, Olivo, Barry, Alyssa, Marfurt, Jutta, Siegel, Sasha, Thuy-Nhien, Nguyen, Quang, Huynh Hong, Anggraeni, Nancy Dian, Laihad, Ferdinand, Liu, Yaobao, Sumiwi, Maria Endang, Trimarsanto, Hidayat, Coutrier, Farah, Fadila, Nadia, Ghanchi, Najia, Johora, Fatema Tuj, Puspitasari, Agatha Mia, Tavul, Livingstone, Trianty, Leily, Utami, Retno Ayu Setya, Wang, Duoquan, Wangchuck, Kesang, Price, Ric N, Auburn, Sarah

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Genomic analysis of Plasmodium vivax describes patterns of connectivity and putative drivers of adaptation in Ethiopia von Kebede, Alebachew Messele, Sutanto, Edwin, Trimarsanto, Hidayat, Benavente, Ernest Diez, Barnes, Mariana, Pearson, Richard D., Siegel, Sasha V., Erko, Berhanu, Assefa, Ashenafi, Getachew, Sisay, Aseffa, Abraham, Petros, Beyene, Lo, Eugenia, Mohammed, Rezika, Yilma, Daniel, Rumaseb, Angela, Nosten, Francois, Noviyanti, Rintis, Rayner, Julian C., Kwiatkowski, Dominic P., Price, Ric N., Golassa, Lemu, Auburn, Sarah

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Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia von Getachew, Sisay, To, Sheren, Trimarsanto, Hidayat, Thriemer, Kamala, Clark, Taane G, Petros, Beyene, Aseffa, Abraham, Price, Ric N, Auburn, Sarah

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Evolutionary study and phylodynamic pattern of human influenza A/H3N2 virus in Indonesia from 2008 to 2010 von Agustiningsih, Agustiningsih, Trimarsanto, Hidayat, Restuadi, Restuadi, Artika, I Made, Hellard, Margaret, Muljono, David Handojo

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A zoonotic human infection with simian malaria, Plasmodium knowlesi, in Central Kalimantan, Indonesia von Setiadi, Wuryantari, Sudoyo, Herawati, Trimarsanto, Hidayat, Sihite, Boy Adventus, Saragih, Riahdo Juliarman, Juliawaty, Rita, Wangsamuda, Suradi, Asih, Puji Budi Setia, Syafruddin, Din

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Genomic analysis of dengue virus serotype 1 (DENV-1) genotypes from Surabaya, Indonesia von Yohan, Benediktus, Wardhani, Puspa, Trimarsanto, Hidayat, Aryati, A., Sasmono, R. Tedjo

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Novel highly-multiplexed AmpliSeq targeted assay for Plasmodium vivax genetic surveillance use cases at multiple geographical scales von Kattenberg, Johanna Helena, Nguyen, Hong Van, Nguyen, Hieu Luong, Sauve, Erin, Nguyen, Ngoc Thi Hong, Chopo-Pizarro, Ana, Trimarsanto, Hidayat, Monsieurs, Pieter, Guetens, Pieter, Nguyen, Xa Xuan, Esbroeck, Marjan Van, Auburn, Sarah, Nguyen, Binh Thi Huong, Rosanas-Urgell, Anna

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A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes von Auburn, Sarah, Böhme, Ulrike, Steinbiss, Sascha, Trimarsanto, Hidayat, Hostetler, Jessica, Sanders, Mandy, Gao, Qi, Nosten, Francois, Newbold, Chris I, Berriman, Matthew, Price, Ric N, Otto, Thomas D

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Genomic profiles of Indonesian colorectal cancer patients [version 2; peer review: 2 approved] von Abdullah, Murdani, Meilany, Sofy, Trimarsanto, Hidayat, Malik, Safarina G., Sukartini, Ninik, Idrus, Firhat, Nursyirwan, Saskia A., Muzellina, Virly N., Pribadi, Rabbinu R., Utari, Amanda P., Maulahela, Hasan, Syam, Ari F.

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Genomic analysis and growth characteristic of dengue viruses from Makassar, Indonesia von Sasmono, R. Tedjo, Wahid, Isra, Trimarsanto, Hidayat, Yohan, Benediktus, Wahyuni, Sitti, Hertanto, Martin, Yusuf, Irawan, Mubin, Halim, Ganda, Idham J., Latief, Rachmat, Bifani, Pablo J., Shi, Pei-Yong, Schreiber, Mark J.

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Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination von Noviyanti, Rintis, Coutrier, Farah, Utami, Retno A S, Trimarsanto, Hidayat, Tirta, Yusrifar K, Trianty, Leily, Kusuma, Andreas, Sutanto, Inge, Kosasih, Ayleen, Kusriastuti, Rita, Hawley, William A, Laihad, Ferdinand, Lobo, Neil, Marfurt, Jutta, Clark, Taane G, Price, Ric N, Auburn, Sarah

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Performance of Simplexa dengue molecular assay compared to conventional and SYBR green RT-PCR for detection of dengue infection in Indonesia von Sasmono, R Tedjo, Aryati, Aryati, Wardhani, Puspa, Yohan, Benediktus, Trimarsanto, Hidayat, Fahri, Sukmal, Setianingsih, Tri Y, Meutiawati, Febrina

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Phylogenetic and evolutionary analyses of dengue viruses isolated in Jakarta, Indonesia von Lestari, C. S. Whinie, Yohan, Benediktus, Yunita, Anisa, Meutiawati, Febrina, Hayati, Rahma Fitri, Trimarsanto, Hidayat, Sasmono, R. Tedjo

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Molecular Epidemiology of P. vivax in Iran: High Diversity and Complex Sub-Structure Using Neutral Markers, but No Evidence of Y976F Mutation at pvmdr1 von Hamedi, Yaghoob, Sharifi-Sarasiabi, Khojasteh, Dehghan, Farzaneh, Safari, Reza, To, Sheren, Handayuni, Irene, Trimarsanto, Hidayat, Price, Ric N, Auburn, Sarah

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Molecular surveillance of dengue in Semarang, Indonesia revealed the circulation of an old genotype of dengue virus serotype-1 von Fahri, Sukmal, Yohan, Benediktus, Trimarsanto, Hidayat, Sayono, S, Hadisaputro, Suharyo, Dharmana, Edi, Syafruddin, Din, Sasmono, R Tedjo

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