Context-specific metabolic networks are consistent with experiments von Becker, Scott A, Palsson, Bernhard O

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Detailed simulations of cell biology with Smoldyn 2.1 von Andrews, Steven S, Addy, Nathan J, Brent, Roger, Arkin, Adam P

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Global entrainment of transcriptional systems to periodic inputs von Russo, Giovanni, di Bernardo, Mario, Sontag, Eduardo D

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Evolution of evolvability in gene regulatory networks von Crombach, Anton, Hogeweg, Paulien

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A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189 von Suthers, Patrick F, Dasika, Madhukar S, Kumar, Vinay Satish, Denisov, Gennady, Glass, John I, Maranas, Costas D

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Noise management by molecular networks von Bruggeman, Frank J, Blüthgen, Nils, Westerhoff, Hans V

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A hidden feedback in signaling cascades is revealed von Ventura, Alejandra C, Sepulchre, Jacques-A, Merajver, Sofía D

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Evolution under fluctuating environments explains observed robustness in metabolic networks von Soyer, Orkun S, Pfeiffer, Thomas

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Rule-based cell systems model of aging using feedback loop motifs mediated by stress responses von Kriete, Andres, Bosl, William J, Booker, Glenn

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A stochastic model for microtubule motors describes the in vivo cytoplasmic transport of human adenovirus von Gazzola, Mattia, Burckhardt, Christoph J, Bayati, Basil, Engelke, Martin, Greber, Urs F, Koumoutsakos, Petros

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Positional information generated by spatially distributed signaling cascades von Muñoz-García, Javier, Neufeld, Zoltan, Kholodenko, Boris N

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Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species von Freilich, Shiri, Kreimer, Anat, Borenstein, Elhanan, Gophna, Uri, Sharan, Roded, Ruppin, Eytan

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Spontaneous reaction silencing in metabolic optimization von Nishikawa, Takashi, Gulbahce, Natali, Motter, Adilson E

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Memory switches in chemical reaction space von Ramakrishnan, Naren, Bhalla, Upinder S

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A predictive model of the oxygen and heme regulatory network in yeast von Kundaje, Anshul, Xin, Xiantong, Lan, Changgui, Lianoglou, Steve, Zhou, Mei, Zhang, Li, Leslie, Christina

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Spatial simulations of myxobacterial development von Holmes, Antony B, Kalvala, Sara, Whitworth, David E

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Modeling structure-function relationships in synthetic DNA sequences using attribute grammars von Cai, Yizhi, Lux, Matthew W, Adam, Laura, Peccoud, Jean

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Automatic assignment of EC numbers von Egelhofer, Volker, Schomburg, Ida, Schomburg, Dietmar

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Rigor and reproducibility in human brain organoid research: Where we are and where we need to go von Sandoval, Soraya O., Cappuccio, Gerarda, Kruth, Karina, Osenberg, Sivan, Khalil, Saleh M., Méndez-Albelo, Natasha M., Padmanabhan, Krishnan, Wang, Daifeng, Niciu, Mark J., Bhattacharyya, Anita, Stein, Jason L., Sousa, André M.M., Waxman, Elisa A., Buttermore, Elizabeth D., Whye, Dosh, Sirois, Carissa L., Anderson, Stewart, Anita, Bhattacharyya, Buttermore, Elizabeth, Chang, Qiang, French, Deborah, Hashimoto-Torii, Kazue, Kornblum, Harley, Kroll, Kristin, Lachman, Herbert M., Maletic-Savatic, Mirjana, Niciu, Mark, Novitch, Bennett, Padmanabhan, Krishnan, Proschel, Chris, Sahin, Mustafa, Sousa, Andre, Stein, Jason, Wang, Daifeng, Waxman, Elisa, Whye, Dosh, Williams, Aislinn, Zhao, Xinyu, Williams, Aislinn, Maletic-Savatic, Mirjana, Zhao, Xinyu

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Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation von Geberth, Daniel, Hütt, Marc-Thorsten

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