An Advanced Strategy for Comprehensive Profiling of ADP-ribosylation Sites Using Mass Spectrometry-based Proteomics von Hendriks, Ivo A., Larsen, Sara C., Nielsen, Michael L.

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Site-specific characterization of endogenous SUMOylation across species and organs von Hendriks, Ivo A., Lyon, David, Su, Dan, Skotte, Niels H., Daniel, Jeremy A., Jensen, Lars J., Nielsen, Michael L.

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Uncovering global SUMOylation signaling networks in a site-specific manner von Hendriks, Ivo A, D'Souza, Rochelle C J, Yang, Bing, Verlaan-de Vries, Matty, Mann, Matthias, Vertegaal, Alfred C O

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Uncovering SUMOylation Dynamics during Cell-Cycle Progression Reveals FoxM1 as a Key Mitotic SUMO Target Protein von Schimmel, Joost, Eifler, Karolin, Sigurðsson, Jón Otti, Cuijpers, Sabine A.G., Hendriks, Ivo A., Verlaan-de Vries, Matty, Kelstrup, Christian D., Francavilla, Chiara, Medema, René H., Olsen, Jesper V., Vertegaal, Alfred C.O.

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Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation von Buch-Larsen, Sara C., Hendriks, Ivo A., Lodge, Jean M., Rykær, Martin, Furtwängler, Benjamin, Shishkova, Evgenia, Westphall, Michael S., Coon, Joshua J., Nielsen, Michael L.

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The regulatory landscape of the human HPF1- and ARH3-dependent ADP-ribosylome von Hendriks, Ivo A., Buch-Larsen, Sara C., Prokhorova, Evgeniia, Elsborg, Jonas D., Rebak, Alexandra K.L.F.S., Zhu, Kang, Ahel, Dragana, Lukas, Claudia, Ahel, Ivan, Nielsen, Michael L.

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SUMO-2 Orchestrates Chromatin Modifiers in Response to DNA Damage von Hendriks, Ivo A., Treffers, Louise W., Verlaan-de Vries, Matty, Olsen, Jesper V., Vertegaal, Alfred C.O.

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Site-Specific Identification of SUMO-2 Targets in Cells Reveals an Inverted SUMOylation Motif and a Hydrophobic Cluster SUMOylation Motif von Matic, Ivan, Schimmel, Joost, Hendriks, Ivo A., van Santen, Maria A., van de Rijke, Frans, van Dam, Hans, Gnad, Florian, Mann, Matthias, Vertegaal, Alfred C.O.

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VCF1 is a p97/VCP cofactor promoting recognition of ubiquitylated p97-UFD1-NPL4 substrates von Mirsanaye, Ann Schirin, Hoffmann, Saskia, Weisser, Melanie, Mund, Andreas, Lopez Mendez, Blanca, Typas, Dimitris, van den Boom, Johannes, Benedict, Bente, Hendriks, Ivo A., Nielsen, Michael Lund, Meyer, Hemmo, Duxin, Julien P., Montoya, Guillermo, Mailand, Niels

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Profiling ubiquitin signalling with UBIMAX reveals DNA damage- and SCFβ-Trcp1-dependent ubiquitylation of the actin-organizing protein Dbn1 von Colding-Christensen, Camilla S., Kakulidis, Ellen S., Arroyo-Gomez, Javier, Hendriks, Ivo A., Arkinson, Connor, Fábián, Zita, Gambus, Agnieszka, Mailand, Niels, Duxin, Julien P., Nielsen, Michael L.

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PARP1-dependent DNA-protein crosslink repair von Fábián, Zita, Kakulidis, Ellen S., Hendriks, Ivo A., Kühbacher, Ulrike, Larsen, Nicolai B., Oliva-Santiago, Marta, Wang, Junhui, Leng, Xueyuan, Dirac-Svejstrup, A. Barbara, Svejstrup, Jesper Q., Nielsen, Michael L., Caldecott, Keith, Duxin, Julien P.

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Transient suppression of SUMOylation in embryonic stem cells generates embryo-like structures von Cossec, Jack-Christophe, Traboulsi, Tatiana, Sart, Sébastien, Loe-Mie, Yann, Guthmann, Manuel, Hendriks, Ivo A., Theurillat, Ilan, Nielsen, Michael L., Torres-Padilla, Maria-Elena, Baroud, Charles N., Dejean, Anne

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Waves of sumoylation support transcription dynamics during adipocyte differentiation von Zhao, Xu, Hendriks, Ivo A, Le Gras, Stéphanie, Ye, Tao, Ramos-Alonso, Lucía, Nguéa P, Aurélie, Lien, Guro Flor, Ghasemi, Fatemeh, Klungland, Arne, Jost, Bernard, Enserink, Jorrit M, Nielsen, Michael L, Chymkowitch, Pierre

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Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells von Theurillat, Ilan, Hendriks, Ivo A., Cossec, Jack-Christophe, Andrieux, Alexandra, Nielsen, Michael L., Dejean, Anne

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Temporal and Site-Specific ADP-Ribosylation Dynamics upon Different Genotoxic Stresses von Buch-Larsen, Sara C., Rebak, Alexandra K. L. F. S., Hendriks, Ivo A., Nielsen, Michael L.

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Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation von Hendriks, Ivo A, Lyon, David, Young, Clifford, Jensen, Lars J, Vertegaal, Alfred C O, Nielsen, Michael L

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Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation von Larsen, Sara C., Hendriks, Ivo A., Lyon, David, Jensen, Lars J., Nielsen, Michael L.

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SUMOylation promotes protective responses to DNA‐protein crosslinks von Borgermann, Nikoline, Ackermann, Leena, Schwertman, Petra, Hendriks, Ivo A, Thijssen, Karen, Liu, Julio CY, Lans, Hannes, Nielsen, Michael L, Mailand, Niels

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MaxQuant.Live Enables Enhanced Selectivity and Identification of Peptides Modified by Endogenous SUMO and Ubiquitin von Hendriks, Ivo A, Akimov, Vyacheslav, Blagoev, Blagoy, Nielsen, Michael L

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Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells von Theurillat, Ilan, Hendriks, Ivo A., Cossec, Jack-Christophe, Andrieux, Alexandra, Nielsen, Michael L., Dejean, Anne

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