Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development von Liang, Ping, Song, Fei, Ghosh, Srimoyee, Morien, Evan, Qin, Maochun, Mahmood, Saleh, Fujiwara, Kyoko, Igarashi, Jun, Nagase, Hiroki, Held, William A

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Association of Tissue-Specific Differentially Methylated Regions (TDMs) with Differential Gene Expression von Song, Fei, Smith, Joseph F., Kimura, Makoto T., Morrow, Arlene D., Matsuyama, Tomoki, Nagase, Hiroki, Held, William A., Gartler, Stanley M.

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Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development von Song, Fei, Mahmood, Saleh, Ghosh, Srimoyee, Liang, Ping, Smiraglia, Domminic J., Nagase, Hiroki, Held, William A.

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Analysis of tissue-specific differentially methylated regions (TDMs) in humans von Kitamura, Eiko, Igarashi, Jun, Morohashi, Aiko, Hida, Naoko, Oinuma, Toshinori, Nemoto, Norimichi, Song, Fei, Ghosh, Srimoyee, Held, William A., Yoshida-Noro, Chikako, Nagase, Hiroki

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Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia von Carninci, Piero, Waki, Kazunori, Shiraki, Toshiyuki, Konno, Hideaki, Shibata, Kazuhiro, Itoh, Masayoshi, Aizawa, Katsunori, Arakawa, Takahiro, Ishii, Yoshiyuki, Sasaki, Daisuke, Bono, Hidemasa, Kondo, Shinji, Sugahara, Yuichi, Saito, Rintaro, Osato, Naoki, Fukuda, Shiro, Sato, Kenjiro, Watahiki, Akira, Hirozane-Kishikawa, Tomoko, Nakamura, Mari, Shibata, Yuko, Yasunishi, Ayako, Kikuchi, Noriko, Yoshiki, Atsushi, Kusakabe, Moriaki, Gustincich, Stefano, Beisel, Kirk, Pavan, William, Aidinis, Vassilis, Nakagawara, Akira, Held, William A, Iwata, Hiroo, Kono, Tomohiro, Nakauchi, Hiromitsu, Lyons, Paul, Wells, Christine, Hume, David A, Fagiolini, Michela, Hensch, Takao K, Brinkmeier, Michelle, Camper, Sally, Hirota, Junji, Mombaerts, Peter, Muramatsu, Masami, Okazaki, Yasushi, Kawai, Jun, Hayashizaki, Yoshihide

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Quantitative analysis of human tissue-specific differences in methylation von Igarashi, Jun, Muroi, Satomi, Kawashima, Hiroyuki, Wang, Xiaofei, Shinojima, Yui, Kitamura, Eiko, Oinuma, Toshinori, Nemoto, Norimichi, Song, Fei, Ghosh, Srimoyee, Held, William A., Nagase, Hiroki

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Epigenetic silencing of the kinase tumor suppressor WNK2 is tumor-type and tumor-grade specific von Jun, Peter, Hong, Chibo, Lal, Anita, Wong, Judith M, McDermott, Michael W, Bollen, Andrew W, Plass, Christoph, Held, William A, Smiraglia, Dominic J, Costello, Joseph F

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Identification of aberrant methylation regions in neuroblastoma by screening of tissue-specific differentially methylated regions von Sugito, Kiminobu, Kawashima, Hiroyuki, Uekusa, Shota, Yoshizawa, Shinsuke, Hoshi, Reina, Furuya, Takeshi, Kaneda, Hide, Hosoda, Toshifumi, Masuko, Takayuki, Ohashi, Kensuke, Ikeda, Taro, Koshinaga, Tsugumichi, Fujiwara, Kyoko, Igarashi, Jun, Ghosh, Srimoyee, Held, William A., Nagase, Hiroki

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Identification of Grf1 on mouse chromosome 9 as an imprinted gene by RLGS-M von Plass, Christoph, Shibata, Hideo, Kalcheva, Iveta, Mullins, Linda, Kotelevtseva, Nina, Mullins, John, Kato, Reiko, Sasaki, Hiroyuki, Hirotsune, Shinji, Okazaki, Yasushi, Held, William A, Hayashizaki, Yoshihide, Chapman, Verne M

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Aberrant CpG-island methylation has non-random and tumour-type-specific patterns von Costello, Joseph F, Plass, Christoph, Frühwald, Michael C, Smiraglia, Dominic J, Rush, Laura J, Robertson, Gavin P, Gao, Xin, Wright, Fred A, Feramisco, Jamison D, Peltomäki, Päivi, Lang, James C, Schuller, David E, Yu, Li, Bloomfield, Clara D, Caligiuri, Michael A, Yates, Allan, Nishikawa, Ryo, Su Huang, H.-J, Petrelli, Nicholas J, Zhang, Xueli, O 'Dorisio, M. S, Held, William A, Cavenee, Webster K

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Excessive CpG island hypermethylation in cancer cell lines versus primary human malignancies von SMIRAGLLA, Dominic J, RUSH, Laura J, CALIGIURI, Michael A, PLASS, Christoph, FRÜHWALD, Michael C, DAI, Zunyan, HELD, William A, COSTELLO, Joseph F, LANG, James C, ENG, Charis, BIN LI, WRIGHT, Fred A

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Non-promoter DNA hypermethylation of Zygote Arrest 1 (ZAR1) in neuroblastomas von Sugito, Kiminobu, Kawashima, Hiroyuki, Yoshizawa, Shinsuke, Uekusa, Shota, Hoshi, Reina, Furuya, Takeshi, Kaneda, Hide, Hosoda, Toshifumi, Konuma, Noriyoshi, Masuko, Takayuki, Ohashi, Kensuke, Ikeda, Taro, Koshinaga, Tsugumichi, Tomita, Ryouichi, Shinojima, Yui, Fujiwara, Kyoko, Watanabe, Takao, Held, William A, Nagase, Hiroki

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Cyclin-dependent kinase 6 (CDK6) amplification in human gliomas identified using two-dimensional separation of genomic DNA von COSTELLO, J. F, PLASS, C, ARAP, W, CHAPMAN, V. M, HELD, W. A, BERGER, M. S, SU HUANG, H.-J, CAVENEE, W. K

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Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: applications of virtual image restriction landmark genomic scanning (Vi‐RLGS) von Matsuyama, Tomoki, Kimura, Makoto T., Koike, Kuniaki, Abe, Tomoko, Nakano, Takeshi, Asami, Tadao, Ebisuzaki, Toshikazu, Held, William A., Yoshida, Shigeo, Nagase, Hiroki

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Novel methylation targets in de novo acute myeloid leukemia with prevalence of chromosome 11 loci von Rush, Laura J., Dai, Zunyan, Smiraglia, Dominic J., Gao, Xin, Wright, Fred A., Frühwald, Michael, Costello, Joseph F., Held, William A., Yu, Li, Krahe, Ralf, Kolitz, Jonathan E., Bloomfield, Clara D., Caligiuri, Michael A., Plass, Christoph

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DNA methylation controls the responsiveness of hepatoma cells to leukemia inhibitory factor von Blanchard, Frédéric, Tracy, Erin, Smith, Joseph, Chattopadhyay, Souvik, Wang, Yanping, Held, William A., Baumann, Heinz

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FR901228, an inhibitor of histone deacetylases, increases the cellular responsiveness to IL-6 type cytokines by enhancing the expression of receptor proteins von BLANCHARD, Frédéric, KINZIE, Erin, YANPING WANG, DUPLOMB, Laurence, GODARD, Anne, HELD, William A, ASCH, Bonnie B, BAUMANN, Heinz

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Genomic imprinting and Igf2 influence liver tumorigenesis and loss of heterozygosity in SV40 T antigen transgenic mice von HADDAD, R, HELD, W. A

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Identification of a novel member of the Snail/Gfi-1 repressor family, mlt 1, which is methylated and silenced in liver tumors of SV40 T antigen transgenic mice von TATENO, Minako, FUKUNISHI, Yoshifumi, KOMATSU, Sei, OKAZAKI, Yasushi, KAWAI, Jun, SHIBATA, Kazuhiro, ITOH, Masayoshi, MURAMATSU, Masami, HELD, William A, HAYASHIZAKI, Yoshihide

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Restriction landmark genome scanning for aberrant methylation in primary refractory and relapsed acute myeloid leukemia; involvement of the WIT-1 gene von Plass, C, Yu, F, Yu, L, Strout, M P, El-Rifai, W, Elonen, E, Knuutila, S, Marcucci, G, Young, D C, Held, W A, Bloomfield, C D, Caligiuri, M A

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