Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal[S] von Wu, Pamela, Heins, Zachary J., Muller, James T., Katsnelson, Lizabeth, de Bruijn, Ino, Abeshouse, Adam A., Schultz, Nikolaus, Fenyö, David, Gao, Jianjiong

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Genetic Predictors of Response to Systemic Therapy in Esophagogastric Cancer von Janjigian, Yelena Y, Sanchez-Vega, Francisco, Jonsson, Philip, Chatila, Walid K, Hechtman, Jaclyn F, Ku, Geoffrey Y, Riches, Jamie C, Tuvy, Yaelle, Kundra, Ritika, Bouvier, Nancy, Vakiani, Efsevia, Gao, Jianjiong, Heins, Zachary J, Gross, Benjamin E, Kelsen, David P, Zhang, Liying, Strong, Vivian E, Schattner, Mark, Gerdes, Hans, Coit, Daniel G, Bains, Manjit, Stadler, Zsofia K, Rusch, Valerie W, Jones, David R, Molena, Daniela, Shia, Jinru, Robson, Mark E, Capanu, Marinela, Middha, Sumit, Zehir, Ahmet, Hyman, David M, Scaltriti, Maurizio, Ladanyi, Marc, Rosen, Neal, Ilson, David H, Berger, Michael F, Tang, Laura, Taylor, Barry S, Solit, David B, Schultz, Nikolaus

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Genomic Alterations Observed in Colitis-Associated Cancers Are Distinct From Those Found in Sporadic Colorectal Cancers and Vary by Type of Inflammatory Bowel Disease von Yaeger, Rona, Shah, Manish A, Miller, Vincent A, Kelsen, Judith R, Wang, Kai, Heins, Zachary J, Ross, Jeffrey S, He, Yuting, Sanford, Eric, Yantiss, Rhonda K, Balasubramanian, Sohail, Stephens, Philip J, Schultz, Nikolaus, Oren, Moshe, Tang, Laura, Kelsen, David

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Driver Fusions and Their Implications in the Development and Treatment of Human Cancers von Foltz, Steven M., Yu, Lihua, Ferguson, Martin L., Liu, Jia, Heiman, David I., Lawrence, Michael S., Saksena, Gordon, Dhankani, Varsha, Hegde, Apurva M., Li, Jun, Liu, Wenbin, Nissan, Moriah G., Sander, Chris, Wong, Christopher K., Ally, Adrian, Kasaian, Katayoon, Moore, Richard A., Cherniack, Andrew D., Meyerson, Matthew, Baylin, Stephen, Bootwalla, Moiz S., Hoadley, Katherine A., Mose, Lisle E., Hale, Walker, Morton, Donna, Santibanez, Jireh, Wheeler, David A., Fulton, Robert S., Wilson, Richard K., Penny, Robert, Gerken, Mark, Leraas, Kristen M., Huntsman, David, Duffy, Elizabeth R., Berkowitz, Ross, Malykh, Andrei, Iacocca, Mary, Roman-Roman, Sergio, Stern, Marc-Henri, Lipp, Eric, Sharp, Alexis, Delman, Keith, Owonikoko, Taofeek, Gillis, Ad, Korpershoek, Esther, Looijenga, Leendert, DiMeco, Francesco, Chen, Chu, Stoehr, Robert, Bubley, Glenn, Campo, Elias, Martignetti, John A., Breggia, Anne, Kocher, Jean-Pierre, Petersen, Gloria, Smyrk, Thomas, Ajani, Jaffer A., Esmaeli, Bita, Logothetis, Christopher, Rice, David, Sood, Anil, Kefford, Richard, Al-Ahmadie, Hikmat, Miller, Judy, Schiffman, Mark, Wentzensen, Nicolas, Caraman, Irina, Clipca, Adrian, Doruc, Serghei, Stancul, Irina, Albert, Monique, Arnaout, Angel, Bartlett, John, Engel, Jay, Urba, Walter, Marino, Mirella, Barnett, Gene, Farver, Carol, Abdel-Rahman, Mohamed H., Cebulla, Colleen M., Kumar, Bahavna, Rai, Karan, Lechan, Ronald, Graefen, Markus, Simon, Ronald, Tennstedt, Pierre, Glenn, Pat, Simko, Jeffry, Steele, Ruth, Campos, Benito, Rosenthal, Howard G., Adebamowo, Sally N., Giordano, Thomas, Moore, Kathleen, Moxley, Katherine, Shipman, Cassaundra, Wolf, Gregory, Ley, Timothy, Van Tine, Brian, Shmulevich, Ilya

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Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context von Chen, Ting-Wen, Singh, Vivek P., Caesar-Johnson, Samantha J., Hutter, Carolyn M., Sun, Qiang, Wu, Ye, Gehlenborg, Nils, Zhang, Hailei, Broom, Bradley M., Ling, Shiyun, Rao, Arvind, Kundra, Ritika, Dhalla, Noreen, Robertson, A. Gordon, Wong, Tina, Kucherlapati, Raju S., Fan, Cheng, Perou, Charles M., Roach, Jeffrey, Simons, Janae V., Fan, Huihui, Shen, Hui, Dinh, Huyen, Doddapaneni, HarshaVardhan, Lee, Sandra, Hess, Julian, Appelbaum, Elizabeth L., Ding, Li, Fulton, Lucinda A., Shelton, Troy, Sherman, Mark, Zmuda, Erik, Corcoran, Niall, de Carvalho, Ana C., Vidal, Daniel O., Hermes, Beth, Paklina, Oxana, Shabunin, Alexey, Eckman, John, Rabeno, Brenda, Bergeron, Alain, Staugaitis, Susan M., Desjardins, Laurence, Sastre, Xavier, Bigner, Darell, McCall, Shannon, McLendon, Roger, Behera, Madhusmita, Brat, Daniel J., Force, Seth, Eijckenboom, Wil, van Kessel, Kim E., Zwarthoff, Ellen C., Wullich, Bernd, Murawa, Dawid, Phu, Bui Duc, Tang, Yufang, Colman, Howard, Bell, Debra, Flotte, Thomas, Ho, Thai, Zhang, Lizhi, Gonzalez, Ana Maria Angulo, Bondaruk, Jolanta, Gershenwald, Jeffrey, Hersey, Peter, Quinn, Michael, Stretch, Jonathan, Synott, Maria, Wilmott, James, Mirsaidi, Cyrus, Nair, Praveen, Vocke, Cathy D., Goparaju, Chandra, Cernat, Mircea, Timmers, Henri, Schilero, Cathy, Manikhas, George, Alvaro, Domenico, Dhanasekaran, Renumathy, Duell, Rebecca, Mandt, Randy, Nguyen, Phuong, Wakely, Paul, Huland, Hartwig, Carroll, Peter R., Chan, June M., Fehrenbach, Ashley, Galbraith, Joseph, Knudson, Michael, Saad, Fred, Zuna, Rosemary, Feldman, Michael, Creaney, Jenette, Kendall, Sara, Bradford, Carol, Haddad, Andrea, DiPersio, John, Rubin, Mark A., Sood, Anil K.

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Designing Automated, High-throughput, Continuous Cell Growth Experiments Using eVOLVER von Heins, Zachary J, Mancuso, Christopher P, Kiriakov, Szilvia, Wong, Brandon G, Bashor, Caleb J, Khalil, Ahmad S

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Abstract 5277: The cBioPortal for cancer genomics and its application in precision oncology von Gao, Jianjiong, Lindsay, James, Watt, Stuart, Bahceci, Istemi, Lukasse, Pieter, Abeshouse, Adam, Chen, Hsiao-Wei, de Bruijn, Ino, Gross, Benjamin, Li, Dong, Kundra, Ritika, Heins, Zachary, Reis-Filho, Jorge, Sumer, Onur, Sun, Yichao, Wang, Jiaojiao, Wang, Qingguo, Zhang, Hongxin, Kumari, Priti, Sahin, M. Furkan, de Ridder, Sander, Schaeffer, Fedde, van Bochove, Kees, Dogrusoz, Ugur, Pugh, Trevor, Sander, Chris, Cerami, Ethan, Schultz, Nikolaus

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The Immune Landscape of Cancer von Bortone, Dante S., Eddy, James A., Liu, Yuexin, Weinstein, John N., Holt, Robert A., Zenklusen, Jean C., Cho, Juok, Reynolds, Sheila, Liu, Wenbin, Ryan, Michael, Chakravarty, Debyani, Schultz, Nikolaus, Stuart, Joshua M., Wilkerson, Matthew D., Balasundaram, Miruna, Carlsen, Rebecca, Chuah, Eric, Holt, Robert, Lee, Darlene, Ha, Gavin, Schumacher, Steven E., Cope, Leslie, Balu, Saianand, Shi, Yan, Hinoue, Toshinori, Glenn, Robert, Miller, Christopher A., Curley, Erin, Mallery, David, Morris, Scott, Longatto-Filho, Adhemar, Reis, Rui M., Scapulatempo-Neto, Cristovam, Singh, Rosy, Le, Xuan, Thorp, Richard, Setdikova, Galiya, Shabunin, Alexey, Barrett, Wendi, Ostrom, Quinn T., Karlan, Beth Y., Hu, Hai, Latour, Mathieu, Lacombe, Louis, Su, Tao, Signoretti, Sabina, Marks, Jeffrey, Olson, Jeffrey J., Sica, Gabriel, Stoop, Hans, Pollo, Bianca, Aymerich, Marta, Stepa, Serghei, Moser, Catherine, Roberts, Lewis, Czerniak, Bogdan, Lazar, Alexander J., Jakrot, Valerie, Scolyer, Richard, Thompson, John, Wilmott, James, Reuter, Victor, Tien, Nguyen Viet, Park, Joong-Won, Pinto, Peter A., Moncrieff, Marc, Botnariuc, Natalia, Pirtac, Maria, Parfitt, Jeremy, Bifulco, Carlo, Antenucci, Anna, Grazi, Gianluca, Marino, Mirella, Chevalier, Simone, McKercher, Ginette, Naska, Theresa, Borgia, Jeffrey A., Pool, Mark, Junker, Kerstin, Moiseenko, Fedor, Hilty, Joe, Pilarski, Robert, Porten, Sima, Asa, Sylvia L., Schadendorf, Dirk, Disaia, Philip, Kelley, Robin K., Sifri, Suzanne, Mannelli, Massimo, Knutson, Tina, Sigmund, Rita, Postier, Russel, Walker, Joan, Feldman, Michael, Luketich, James, Rozek, Laura, Fong, Kwun M., Hooke, Jeffrey A., Govindan, Ramaswamy, Aredes, Natália D.

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Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer von Wolf, Denise M., Cherniack, Andrew D., Sanchez-Vega, Francisco, Sun, Qiang, Wu, Ye, Gehlenborg, Nils, Zhang, Hailei, Akbani, Rehan, Ling, Shiyun, Rao, Arvind, Phillips, Sarah M., Sun, Yichao, Benz, Christopher, Dhalla, Noreen, Robertson, A. Gordon, Sipahimalani, Payal, Wong, Tina, Weisenberger, Daniel J., Bodenheimer, Tom, Roach, Jeffrey, Simons, Janae V., Fan, Huihui, Zhou, Wanding, Dinh, Huyen, Doddapaneni, HarshaVardhan, Han, Yi, Lee, Sandra, Liu, Xiuping, Hess, Julian, Ding, Li, Fulton, Lucinda A., Shelton, Troy, Zmuda, Erik, de Carvalho, Ana C., Vidal, Daniel O., Eschbacher, Jennifer, Hermes, Beth, Noss, Ardene, Shabunin, Alexey, Eckman, John, Bennett, Joseph, Rabeno, Brenda, Swanson, Patricia, Bergeron, Alain, Staugaitis, Susan M., Chabot, John, McCall, Shannon, Behera, Madhusmita, Brat, Daniel J., Force, Seth, Eijckenboom, Wil, Zwarthoff, Ellen C., Cuppini, Lucia, Murawa, Dawid, Mikkelsen, Tom, Hanh, Phan Thi, Phu, Bui Duc, Tang, Yufang, Colman, Howard, Birrer, Michael, Ho, Thai, Nagorney, David, Meric-Bernstam, Funda, Moran, Cesar, Hersey, Peter, Synott, Maria, Mirsaidi, Cyrus, Metwalli, Adam R., Vocke, Cathy D., Goparaju, Chandra, Cernat, Mircea, Gilbert, Sebastien, Timmers, Henri, Schilero, Cathy, Manikhas, George, Chesla, David, Janssen, Klaus-Peter, Slotta-Huspenina, Julia, Davis, Amy, Elder, J. Bradley, Lehman, Norman L., Mandt, Randy, Wakely, Paul, Powers, James, Carroll, Peter R., Chan, June M., Roggin, Kevin, Fehrenbach, Ashley, Galbraith, Joseph, Knudson, Michael, Saad, Fred, Bocklage, Therese, Zuna, Rosemary, Feldman, Michael, Quintero-Aguilo, Mario, Tirapelli, Daniela, Creaney, Jenette, Shelley, Carl Simon, Bradford, Carol, Prince, Mark

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Comprehensive Characterization of Cancer Driver Genes and Mutations von Colaprico, Antonio, Cao, Song, Liang, Wen-Wei, Hess, Julian M., Ferguson, Martin L., Hutter, Carolyn M., Tarnuzzer, Roy, Wang, Zhining, Noble, Michael S., Dhankani, Varsha, Knijnenburg, Theo, Miller, Michael, Abeshouse, Adam, Ladanyi, Marc, Luna, Augustin, Wong, Christopher K., Yau, Christina, Kasaian, Katayoon, Kucherlapati, Melanie H., Danilova, Ludmila, Bootwalla, Moiz S., Fan, Cheng, Mose, Lisle E., Roach, Jeffrey, Tan, Donghui, Covington, Kyle, Donehower, Lawrence A., Drummond, Jennifer, Liu, Xiuping, Morgan, Margaret, Wheeler, David A., Appelbaum, Elizabeth L., Bailey, Matthew, Kandoth, Cyriac, Wilson, Richard K., Penny, Robert, Thompson, Eric, Zmuda, Erik, de Carvalho, Ana C., Fregnani, José H., Huntsman, David, Kohl, Bernard, Paklina, Oxana, McPherson, Christopher, Barnholtz-Sloan, Jill S., Tucker, Kelinda, Larson, Caroline, Iacocca, Mary, Bergeron, Alain, Sepulveda, Antonia, Desjardins, Laurence, Sastre, Xavier, Cheng, Feixiong, Force, Seth, Khuri, Fadlo, Owonikoko, Taofeek, Korpershoek, Esther, Looijenga, Leendert, DiMeco, Francesco, Kycler, Witold, Chung, Ki, Noushmehr, Houtan, Scarpace, Lisa, Campo, Elias, Van Bang, Nguyen, Colman, Howard, Breggia, Anne, Bryce, Alan H., Copland, John A., Petersen, Gloria, Zhang, Lizhi, Mann, Graham, Mirsaidi, Cyrus, Zaren, Howard, Stancul, Irina, Tcaciuc, Diana, Arnaout, Angel, Rassl, Doris M., Urba, Walter, Farver, Carol, Raymond, Daniel, Dinkin, Mikhail, Carpino, Guido, Dubina, Michael, Abdel-Rahman, Mohamed H., Mandt, Randy, Nguyen, Phuong, Rai, Karan, Waldmann, Jens, Fassnacht, Martin, Simon, Ronald, Fehrenbach, Ashley, von Deimling, Andreas, Jacobus, Laura, Carlotti, Carlos Gilberto, Godwin, Eryn M., Carey, Thomas, Getz, Gad, Lazar, Alexander J., Ding, Li

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Genomic and Functional Approaches to Understanding Cancer Aneuploidy von Demchok, John A., Ferguson, Martin L., Tarnuzzer, Roy, Yang, Liming, DeFreitas, Timothy, Noble, Michael S., Voet, Doug, Dhankani, Varsha, Leinonen, Kalle, Ju, Zhenlin, Korkut, Anil, Liu, Wenbin, Weinstein, John N., Abeshouse, Adam, Chakravarty, Debyani, Taylor, Barry S., Anur, Pavana, Wong, Christopher K., Yau, Christina, Ally, Adrian, Kasaian, Katayoon, Mayo, Michael, Moore, Richard A., Berger, Ashton C., Gao, Galen F., Meyerson, Matthew, Danilova, Ludmila, Bootwalla, Moiz S., Hoadley, Katherine A., Jones, Corbin D., Mose, Lisle E., Tan, Donghui, Hu, Jianhong, Liu, Xiuping, Sheth, Margi, Bailey, Matthew, Fronick, Catrina C., Kandoth, Cyriac, Wilson, Richard K., Lau, Kevin, Penny, Robert, Thompson, Eric, Fregnani, José H., McPherson, Christopher, Berkowitz, Ross, Barnholtz-Sloan, Jill S., Myers, Jerome, Tucker, Kelinda, Zelinka, Tomas, Sepulveda, Antonia, Desjardins, Laurence, Lipp, Eric, Sharp, Alexis, Delman, Keith, Owonikoko, Taofeek, Oosterhuis, Wolter, DiMeco, Francesco, Finocchiaro, Gaetano, Perin, Alessandro, Wiznerowicz, Maciej, Baudin, Eric, Noushmehr, Houtan, Scarpace, Lisa, Dottino, Peter R., Breggia, Anne, Bryce, Alan H., Copland, John A., Kocher, Jean-Pierre, Petersen, Gloria, Rivera, Michael, Esmaeli, Bita, Logothetis, Christopher, Sood, Anil, Kefford, Richard, Shannon, Kerwin, Ghossein, Ronald, Smith, Jennifer, Wentzensen, Nicolas, Tcaciuc, Diana, Engel, Jay, Rassl, Doris M., Urba, Walter, Merola, Roberta, Cardinale, Vincenzo, Carpino, Guido, Cottingham, Sandra, Janssen, Klaus-Peter, Davis, Amy, Lang, James, Rai, Karan, Kastl, Alison, Waldmann, Jens, Simon, Ronald, Simko, Jeffry, VandenBerg, Scott, Unterberg, Andreas, Beer, David, Mora Pinero, Edna M., Peterson, Lisa, Ley, Timothy

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Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas von Abeshouse, Adam, Armenia, Joshua, Auman, J. Todd, Bailey, Matthew H., Baker, Laurence, Balasundaram, Miruna, Balu, Saianand, Baylin, Stephen B., Behera, Madhusmita, Benz, Christopher, Bocklage, Thèrése, Boice, Lori, Bootwalla, Moiz S., Bowlby, Reanne, Boyd, Jeff, Castro, Patricia, Cherniack, Andrew D., Chudamani, Sudha, Cooper, Lee A.D., Davis, Ian J., Demetri, George D., Demicco, Elizabeth G., Ding, Li, DiSaia, Phil, Dottino, Peter, Eschbacher, Jennifer, Fedosenko, Konstantin, Ferguson, Martin L., Gao, Qingsong, Gastier-Foster, Julie M., Gerken, Mark, Godwin, Eryn M., Gordienko, Elena, Grilley-Olson, Juneko E., Gutman, David A., Hegde, Apurva M., Heiman, David I., Helsel, Carmen, Hoadley, Katherine A., Hobensack, Shital, Hornick, Jason L., Hoyle, Alan P., Iacocca, Mary, Ittmann, Michael, Jones, Steven J.M., Kim, Jaegil, Ladanyi, Marc, Lai, Phillip H., Larsson, Erik, Lee, Sanghoon, Lehmann, Kjong-Van, Levine, Douglas A., Liu, Jia, Liu, Wenbin, Liu, Eric Minwei, Lu, Yiling, Madan, Rashna, Magliocco, Anthony, Maki, Robert G., Martinez, Cathleen, Mayo, Michael, McLellan, Michael D., Mozgovoy, Evgeny, Mungall, Andrew J., Mungall, Karen, Noble, Michael S., Olvera, Narciso, Paklina, Oxana, Paulauskis, Joseph, Penny, Robert, Perou, Charles M., Perou, Amy H., Pollock, Raphael E., Ramalingam, Suresh S., Reilly, Colleen, Reynolds, Sheila M., Roach, Jeffrey, Roszik, Jason, Sadeghi, Sara, Saksena, Gordon, Sanchez-Vega, Francisco, Sander, Chris, Schein, Jacqueline E., Shelton, Candace, Shelton, Troy, Shi, Yan, Shmulevich, Ilya, Sipahimalani, Payal, Swanson, Patricia, Tarnuzzer, Roy, Thiessen, Nina, Thorne, Leigh B., Van Tine, Brian A., Verhaak, Roel, Voronina, Olga, Wang, Jing, Wise, Lisa, Wyczalkowski, Matthew, Yau, Christina, Yellapantula, Venkata

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Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas von Kim, Jaegil, Mishra, Lopa, Wang, Zhining, Liu, Jia, Getz, Gad, Lawrence, Michael S., Saksena, Gordon, Voet, Doug, Zhang, Wei, Hegde, Apurva M., Korkut, Anil, Sanchez-Vega, Francisco, Sander, Chris, Schultz, Nikolaus, Stuart, Joshua M., Parker, Joel S., Ally, Adrian, Carlsen, Rebecca, Kasaian, Katayoon, Ma, Yussanne, Marra, Marco A., Berger, Ashton C., Cherniack, Andrew D., Shih, Juliann, Kucherlapati, Melanie H., Maglinte, Dennis T., Hale, Walker, Korchina, Viktoriya, Morgan, Margaret, Santibanez, Jireh, Wang, Linghua, Wheeler, David A., Fulton, Robert S., Thompson, Eric, Bowen, Jay, Gerken, Mark, Leraas, Kristen M., Reis, Rui M., Kohl, Bernard, Berkowitz, Ross, Malykh, Andrei, Fulop, Jordonna, Sloan, Andrew E., Larson, Caroline, Iacocca, Mary, Roman-Roman, Sergio, Stern, Marc-Henri, Cheng, Feixiong, Delman, Keith, Maithel, Shishir, Chen, Chu, Stoehr, Robert, Edenfield, W. Jeffrey, Bubley, Glenn, De Rienzo, Assunta, Richards, William G., Kalkanis, Steven, Scarpace, Lisa, Martignetti, John A., Borad, Mitesh, O’Neill, Brian Patrick, Que, Florencia, Smyrk, Thomas, Esmaeli, Bita, Sood, Anil, Kakavand, Hojabr, Mann, Graham, Gopalan, Anuradha, Singh, Bhuvanesh, Miller, Judy, Yang, Hannah, Melamed, Jonathan, Caraman, Irina, Clipca, Adrian, Mura, Sergiu, Albert, Monique, Bartlett, John, Urba, Walter, Raymond, Daniel, Kumar, Bahavna, Sexton, Katherine C., Fassnacht, Martin, Graefen, Markus, Tennstedt, Pierre, Kendler, Ady, Campos, Benito, Jacobus, Laura, Adebamowo, Sally N., Giordano, Thomas, Mes-Masson, Anne-Marie, Moore, Kathleen, Moxley, Katherine, Pinero, Edna M. Mora, Dos Santos, Jose Sebastião, Agnew, Kathy, Godwin, Eryn M., Shipman, Cassaundra, Carey, Thomas, Wolf, Gregory, Van Tine, Brian

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lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer von Li, Song, Wan, Yunhu, Wu, Ye, Akbani, Rehan, Rao, Arvind, Luna, Augustin, Phillips, Sarah M., Sumer, S. Onur, Spellman, Paul, Benz, Christopher, Dhalla, Noreen, Holt, Robert, Sadeghi, Sara, Sipahimalani, Payal, Thiessen, Nina, Van Den Berg, David J., Perou, Charles M., Simons, Janae V., Doddapaneni, HarshaVardhan, Li, Wei, Bailey, Matthew, Ding, Li, Mallery, David, Shelton, Troy, Gastier-Foster, Julie M., Zmuda, Erik, Corcoran, Niall, Eschbacher, Jennifer, Noss, Ardene, Andry, Chris, Raut, Chandrajit P., Barrett, Wendi, De Rose, Agostino, Giuliante, Felice, Hagedorn, Curt H., Bennett, Joseph, Rabeno, Brenda, Swanson, Patricia, Staugaitis, Susan M., Chabot, John, Potapova, Olga, Secord, Angeles, Hanh, Phan Thi, Juhl, Hartmut, Akeredolu, Teniola, Birrer, Michael, Flotte, Thomas, Ho, Thai, Roberts, Lewis, Stanton, Melissa, Yang, Ju Dong, Gonzalez, Ana Maria Angulo, Bondaruk, Jolanta, Fujimoto, Junya, Gershenwald, Jeffrey, Lazar, Alexander J., Meric-Bernstam, Funda, Moran, Cesar, Synott, Maria, Wilmott, James, Reuter, Victor, Nair, Praveen, Metwalli, Adam R., Schmidt, Laura S., Vocke, Cathy D., Cernat, Mircea, Chemencedji, Inga, Pirtac, Maria, Alexopoulou, Iakovina, Tamakawa, Raina, Timmers, Henri, Schilero, Cathy, Smolenski, Kathy, Manikhas, George, Alvaro, Domenico, Chesla, David, Moiseenko, Fedor, Aziz, Dina, Elder, J. Bradley, Mandt, Randy, Wakely, Paul, Powers, James, Chan, June M., Landen, Charles N., Roggin, Kevin, Hernandez, Brenda, Unterberg, Andreas, Knudson, Michael, Knutson, Tina, Godwin, Andrew K., Bocklage, Therese, Postier, Russel, Zuna, Rosemary, Feldman, Michael, Dhir, Rajiv, Tirapelli, Daniela, Catto, James, Shelley, Carl Simon, Fong, Kwun M., Shriver, Craig D.

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Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas von Knijnenburg, Theo A., Liu, Yuexin, Kim, Pora, Zhang, Shaojun, Zhao, Zhongming, Laird, Peter W., Ferguson, Martin L., Liu, Jia, Lawrence, Michael S., Saksena, Gordon, Voet, Doug, Dhankani, Varsha, Hegde, Apurva M., Ladanyi, Marc, Sander, Chris, Anur, Pavana, Wong, Christopher K., Yau, Christina, Ally, Adrian, Kasaian, Katayoon, Ma, Yussanne, Shih, Juliann, Maglinte, Dennis T., Drummond, Jennifer, Hale, Walker, Korchina, Viktoriya, Morgan, Margaret, Morton, Donna, Sheth, Margi, Wang, Linghua, Wheeler, David A., Kandoth, Cyriac, Lau, Kevin, Thompson, Eric, Leraas, Kristen M., Huntsman, David, Horowitz, Neil, Fulop, Jordonna, Sloan, Andrew E., Tucker, Kelinda, Zelinka, Tomas, Iacocca, Mary, Sepulveda, Antonia, Roman-Roman, Sergio, Stern, Marc-Henri, Lipp, Eric, Delman, Keith, Gillis, Ad, Korpershoek, Esther, Looijenga, Leendert, Perin, Alessandro, Stoehr, Christine, Stoehr, Robert, Wach, Sven, Kycler, Witold, Chung, Ki, Martin, Julie, Bubley, Glenn, De Rienzo, Assunta, Richards, William G., Campo, Elias, Evason, Kimberley, Borad, Mitesh, Kocher, Jean-Pierre, Petersen, Gloria, Que, Florencia, Ajani, Jaffer A., Esmaeli, Bita, Logothetis, Christopher, Sood, Anil, Mann, Graham, Gopalan, Anuradha, Zaren, Howard, Yang, Hannah, Caraman, Irina, Mura, Sergiu, Stancul, Irina, Albert, Monique, Arnaout, Angel, Rassl, Doris M., Barnett, Gene, Farver, Carol, Raymond, Daniel, Dinkin, Mikhail, Kumar, Bahavna, Waldmann, Jens, Fassnacht, Martin, Tennstedt, Pierre, Glenn, Pat, Kendler, Ady, Steele, Ruth, Campos, Benito, Adebamowo, Sally N., Giordano, Thomas, Mes-Masson, Anne-Marie, Moxley, Katherine, Pinero, Edna M. Mora, Carey, Thomas, Wolf, Gregory, Ley, Timothy

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Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images von Kurc, Tahsin, Demchok, John A., Ferguson, Martin L., Tarnuzzer, Roy, Yang, Liming, DeFreitas, Timothy, Noble, Michael S., Voet, Doug, Dhankani, Varsha, Leinonen, Kalle, Ju, Zhenlin, Korkut, Anil, Liu, Wenbin, Abeshouse, Adam, Chakravarty, Debyani, Taylor, Barry S., Anur, Pavana, Wong, Christopher K., Yau, Christina, Ally, Adrian, Kasaian, Katayoon, Mayo, Michael, Moore, Richard A., Berger, Ashton C., Gao, Galen F., Meyerson, Matthew, Danilova, Ludmila, Bootwalla, Moiz S., Hoadley, Katherine A., Jones, Corbin D., Mose, Lisle E., Tan, Donghui, Hu, Jianhong, Liu, Xiuping, Sheth, Margi, Bailey, Matthew, Fronick, Catrina C., Kandoth, Cyriac, Wilson, Richard K., Lau, Kevin, Penny, Robert, Thompson, Eric, Fregnani, José H., McPherson, Christopher, Berkowitz, Ross, Barnholtz-Sloan, Jill S., Myers, Jerome, Tucker, Kelinda, Zelinka, Tomas, Sepulveda, Antonia, Desjardins, Laurence, Lipp, Eric, Sharp, Alexis, Delman, Keith, Owonikoko, Taofeek, Oosterhuis, Wolter, DiMeco, Francesco, Finocchiaro, Gaetano, Perin, Alessandro, Wiznerowicz, Maciej, Baudin, Eric, Noushmehr, Houtan, Scarpace, Lisa, Dottino, Peter R., Breggia, Anne, Bryce, Alan H., Copland, John A., Kocher, Jean-Pierre, Petersen, Gloria, Rivera, Michael, Esmaeli, Bita, Logothetis, Christopher, Sood, Anil, Kefford, Richard, Shannon, Kerwin, Ghossein, Ronald, Smith, Jennifer, Wentzensen, Nicolas, Tcaciuc, Diana, Engel, Jay, Rassl, Doris M., Urba, Walter, Merola, Roberta, Cardinale, Vincenzo, Carpino, Guido, Cottingham, Sandra, Janssen, Klaus-Peter, Davis, Amy, Lang, James, Rai, Karan, Kastl, Alison, Waldmann, Jens, Simon, Ronald, Simko, Jeffry, VandenBerg, Scott, Unterberg, Andreas, Beer, David, Peterson, Lisa, Ley, Timothy, Thorsson, Vésteinn

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Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics von Wyczalkowski, Matthew A., Ferguson, Martin L., Hutter, Carolyn M., Tarnuzzer, Roy, Naresh, Rashi, DeFreitas, Timothy, Noble, Michael S., Dhankani, Varsha, Leinonen, Kalle, Miller, Michael, Broom, Bradley M., Ju, Zhenlin, Korkut, Anil, Mills, Gordon B., Weinstein, John N., Armenia, Joshua, Ladanyi, Marc, Luna, Augustin, Ochoa, Angelica, Wong, Christopher K., Yau, Christina, Mayo, Michael, Meyerson, Matthew, Danilova, Ludmila, Bootwalla, Moiz S., Hoadley, Katherine A., Jones, Corbin D., Mose, Lisle E., Tan, Donghui, Drummond, Jennifer, Morton, Donna, Sheth, Margi, Fronick, Catrina C., Wilson, Richard K., Penny, Robert, Ramirez, Nilsa C., Huntsman, David, McPherson, Christopher, Malykh, Andrei, Myers, Jerome, Tucker, Kelinda, Staugaitis, Susan M., Sepulveda, Antonia, Desjardins, Laurence, Sastre, Xavier, Lipp, Eric, Sharp, Alexis, Eijckenboom, Wil, Gillis, Ad, Korpershoek, Esther, Looijenga, Leendert, Oosterhuis, Wolter, DiMeco, Francesco, Wach, Sven, Chung, Ki, Martin, Julie, Noushmehr, Houtan, Scarpace, Lisa, Campo, Elias, Van Bang, Nguyen, Colman, Howard, Dottino, Peter R., Breggia, Anne, Bryce, Alan H., Copland, John A., Kendrick, Michael, Rivera, Michael, Ajani, Jaffer A., Gershenwald, Jeffrey, Kakavand, Hojabr, Al-Ahmadie, Hikmat, Smith, Jennifer, Zaren, Howard, Wentzensen, Nicolas, Tcaciuc, Diana, Arnaout, Angel, Engel, Jay, Rassl, Doris M., Urba, Walter, Merola, Roberta, Barnett, Gene, Farver, Carol, Carpino, Guido, Dubina, Michael, Abdel-Rahman, Mohamed H., Cebulla, Colleen M., Nguyen, Phuong, Rai, Karan, Kastl, Alison, Waldmann, Jens, Simon, Ronald, Simko, Jeffry, Steele, Ruth, Jacobus, Laura, Moore, Kathleen, Carlotti, Carlos Gilberto, Kendall, Sara, Bradford, Carol, Peterson, Lisa, DiPersio, John

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Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer von Wang, Yumeng, Xu, Xiaoyan, Maglic, Dejan, Dill, Michael T, Mojumdar, Kamalika, Ng, Patrick Kwok-Shing, Jeong, Kang Jin, Tsang, Yiu Huen, Moreno, Daniela, Bhavana, Venkata Hemanjani, Peng, Xinxin, Ge, Zhongqi, Chen, Hu, Li, Jun, Chen, Zhongyuan, Zhang, Huiwen, Han, Leng, Du, Di, Creighton, Chad J, Mills, Gordon B, Camargo, Fernando, Liang, Han

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A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples von Caesar-Johnson, Samantha J., Demchok, John A., Zenklusen, Jean C., Meier, Sam, Kanchi, Rupa S., Lu, Yiling, Ng, Kwok-Shing, Gao, Jianjiong, Heins, Zachary J., Ochoa, Angelica, Schultz, Nikolaus, Zhang, Hongxin, Hayes, D. Neil, Balasundaram, Miruna, Jones, Steven J.M., Lee, Darlene, Mungall, Karen, Cibulskis, Carrie, Schumacher, Steven E., Perou, Amy H., Shi, Yan, Hinoue, Toshinori, Creighton, Chad J., Glenn, Robert, Wang, Min, Schmidt, Heather K., Gardner, Johanna, Morris, Scott, Paulauskis, Joseph, Burnette, Andrew, Le, Xuan, Thorp, Richard, Setdikova, Galiya, Muto, Michael, Devine, Karen, Karlan, Beth Y., Harr, Jodi, Vicha, Ales, Têtu, Bernard, McGraw, Mary, Mariani, Odette, Marks, Jeffrey, Chen, Amy, Olson, Jeffrey J., Ramalingam, Suresh, Calatozzolo, Chiara, Mattei, Luca, Pollo, Bianca, Houck, John, Bueno, Raphael, Girard, Nicolas, Kang, Koo Jeong, Chandan, Vishal, Moser, Catherine, Thompson, R. Houston, Torbenson, Michael, Behrens, Carmen, Lazar, Alexander J., Ramondetta, Lois, Thompson, Timothy, Lee, Kenneth, Saw, Robyn, Spillane, Andrew, Chan, Timothy A., Tien, Nguyen Viet, Park, Joong-Won, Pinto, Peter A., Pass, Harvey, Pirtac, Maria, Sekhon, Harman, Facciolo, Francesco, McKercher, Ginette, Naska, Theresa, Pennell, Nathan A., Williams, Felicia, Seder, Christopher W., Junker, Kerstin, Omberg, Larsson, Becker, Karl-Friedrich, Hilty, Joe, Grizzle, William E., Porten, Sima, Schadendorf, Dirk, Couce, Marta, Schlomm, Thorsten, Olabode, Oluwole, Nelson, Mark, Bathe, Oliver, Disaia, Philip, Kelley, Robin K., Carey, Francis, Forgie, Ian, Herold-Mende, Christel, Bossler, Aaron, Sigmund, Rita, Landrum, Lisa, Luketich, James, Kemp, Rafael, Fantacone-Campbell, J. Leigh, Aredes, Natália D.

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Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas von Campbell, Joshua D., Liu, Yuexin, Byers, Lauren Averett, Zuna, Rosemary, Al-Ahmadie, Hikmat, Flores, Elsa R., Tsai, Kenneth Y., Felau, Ina, Zhang, Jiashan (Julia), Meier, Sam, Bernard, Brady, Zhang, Jiexin, Gross, Benjamin E., Nissan, Moriah G., Phillips, Sarah M., Zhang, Hongxin, Bowlby, Reanne, Mungall, Karen, Schein, Jacqueline E., Sipahimalani, Payal, Tse, Kane, Cope, Leslie, Lai, Phillip H., Van Den Berg, David J., Jefferys, Stuart R., Mieczkowski, Piotr A., Soloway, Matthew G., Veluvolu, Umadevi, Fan, Huihui, Zhou, Wanding, Bellair, Michelle, Doddapaneni, HarshaVardhan, Muzny, Donna, Xi, Liu, Mardis, Elaine R., Morris, Scott, Paulauskis, Joseph, Gastier-Foster, Julie M., Lichtenberg, Tara M., Carvalho, Andre L., Silveira, Henrique C.S., Burnette, Andrew, Noss, Ardene, Ittmann, Michael, Andry, Chris, Lyadov, Vladimir, Raut, Chandrajit P., Têtu, Bernard, Chabot, John, Potapova, Olga, Bigner, Darell, Secord, Angeles, Ramalingam, Suresh, Mattei, Luca, Houck, John, Guillermo, Armando López, Kang, Koo Jeong, Thompson, R. Houston, Yang, Ju Dong, Bondaruk, Jolanta, Broaddus, Russell, Fujimoto, Junya, Thompson, Timothy, Tsao, Anne, Wistuba, Ignacio, Haydu, Lauren, Hersey, Peter, Lee, Kenneth, Spillane, Andrew, Drwiega, Paul, Park, Joong-Won, Hung, Nguyen Phi, Kebebew, Electron, Pacak, Karel, Schmidt, Laura S., Gorincioi, Ghenadie, Thomas, George, Tamakawa, Raina, Smolenski, Kathy, Alvaro, Domenico, Bragazzi, Maria Consiglia, Chesla, David, Becker, Karl-Friedrich, Schoenfield, Lynn, Senecal, Kelly, Tischler, Arthur, Nelson, Mark, Carroll, Peter R., Carey, Francis, Forgie, Ian, Carney, Michael, Godwin, Andrew K., Bocklage, Therese, Valdivieso, Federico, Dhir, Rajiv, Sankarankuty, Ajith, Fantacone-Campbell, J. Leigh, Kovatich, Albert J., Weinstein, John N., Peto, Myron

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