PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems von Ghaffarizadeh, Ahmadreza, Heiland, Randy, Friedman, Samuel H, Mumenthaler, Shannon M, Macklin, Paul

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High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow von Ozik, Jonathan, Collier, Nicholson, Wozniak, Justin M, Macal, Charles, Cockrell, Chase, Friedman, Samuel H, Ghaffarizadeh, Ahmadreza, Heiland, Randy, An, Gary, Macklin, Paul

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Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model von Ito, Shinya, Hansen, Michael E, Heiland, Randy, Lumsdaine, Andrew, Litke, Alan M, Beggs, John M

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The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents von Sluka, James P, Shirinifard, Abbas, Swat, Maciej, Cosmanescu, Alin, Heiland, Randy W, Glazier, James A

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PhysiCell Studio: a graphical tool to make agent-based modeling more accessible von Heiland, Randy, Bergman, Daniel, Lyons, Blair, Waldow, Grant, Cass, Julie, Lima da Rocha, Heber, Ruscone, Marco, Noël, Vincent, Macklin, Paul

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Multicell Simulations of Development and Disease Using the CompuCell3D Simulation Environment von Swat, Maciej H., Hester, Susan D., Balter, Ariel I., Heiland, Randy W., Zaitlen, Benjamin L., Glazier, James A.

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PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling von Letort, Gaelle, Montagud, Arnau, Stoll, Gautier, Heiland, Randy, Barillot, Emmanuel, Macklin, Paul, Zinovyev, Andrei, Calzone, Laurence

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Building multiscale models with PhysiBoSS, an agent-based modeling tool von Ruscone, Marco, Checcoli, Andrea, Heiland, Randy, Barillot, Emmanuel, Macklin, Paul, Calzone, Laurence, Noël, Vincent

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Learning-accelerated discovery of immune-tumour interactions von Ozik, Jonathan, Collier, Nicholson, Heiland, Randy, An, Gary, Macklin, Paul

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MultiCellDS to ISA-Tab Mapping Early Draft May, 2018 von Friedman, Samuel, Heiland, Randy, Aiyetan, Paul

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Learning-accelerated discovery of immune-tumour interactions† †Electronic supplementary information (ESI) available: Simulation animations: https://www.youtube.com/watch?v=6GPXZvlN... von Ozik, Jonathan, Collier, Nicholson, Heiland, Randy, An, Gary, Macklin, Paul

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xml2jupyter: Mapping parameters between XML and Jupyter widgets von Heiland, Randy, Mishler, Daniel, Zhang, Tyler, Bower, Eric, Macklin, Paul

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TR-08.01-Motility Training.pdf von Macklin, Paul, Heiland, Randy, Kurtoglu, Furkan, Sundus, Aneequa

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MutDB: update on development of tools for the biochemical analysis of genetic variation von Singh, Arti, Olowoyeye, Adebayo, Baenziger, Peter H, Dantzer, Jessica, Kann, Maricel G, Radivojac, Predrag, Heiland, Randy, Mooney, Sean D

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Visual Methods for Interpreting Optical Nonlinearity at the Molecular Level von Wampler, Ronald D, Moad, Andrew J, Moad, Charles W, Heiland, Randy, Simpson, Garth J

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MutDB services: interactive structural analysis of mutation data von Dantzer, Jessica, Moad, Charles, Heiland, Randy, Mooney, Sean

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PhysiCell demo: heterogeneous tumor growth von Ahmadreza Ghaffarizadeh, Heiland, Randy, Friedman, Samuel, Mumenthaler, Shannon, Macklin, Paul

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PhysiCell Demo: anti-cancer bio-robots von Ahmadreza Ghaffarizadeh, Heiland, Randy, Friedman, Samuel, Mumenthaler, Shannon, Macklin, Paul

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3-D PhysiCell simulation of ductal carcinoma in situ - stochastic necrosis model von Ahmadreza Ghaffarizadeh, Heiland, Randy, Friedman, Samuel, Mumenthaler, Shannon, Macklin, Paul

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PhysiCell Demo: Bio-robots von Ahmadreza Ghaffarizadeh, Heiland, Randy, Friedman, Samuel, Mumenthaler, Shannon, Macklin, Paul

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