Pegasys: software for executing and integrating analyses of biological sequences von Shah, Sohrab P, He, David Y M, Sawkins, Jessica N, Druce, Jeffrey C, Quon, Gerald, Lett, Drew, Zheng, Grace X Y, Xu, Tao, Ouellette, B F Francis

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A 1-Year Randomized Trial of Calcium Acetate Versus Sevelamer on Progression of Coronary Artery Calcification in Hemodialysis Patients With Comparable Lipid Control: The Calcium Ac... von Qunibi, Wajeh, MD, Moustafa, Moustafa, MD, Muenz, Larry R., PhD, He, David Y., MS, Kessler, Paul D., MD, Diaz-Buxo, Jose A., MD, Budoff, Mathew, MD

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There are three columns – the name of the parameter, its current value and a check box to indicate if this parameter is enabled von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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A FASTA formatted database is to be formatted for BLAST using 'formatdb' von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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There are three core tables to the database: sequence (shown in blue), program run (shown in orange) and pegasys result (shown in yellow) von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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The visible pane is the canvas pane which allows the user to create a workflow by clicking and dragging icons corresponding to the programs available to the system von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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The input/output values are selected with drop-down select bars so users can only select input/output types that are available to the two nodes von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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This workflow executes gene prediction, tRNA detection, repeat detection, sequence similarity searching against protein and transcript databases and alignments of transcripts to ge... von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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Arrows between the layers indicate a transfer of data von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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A): Consider 1: this could be an input sequence that is used by two sequence analysis programs 2 and 3 von P Shah, Sohrab, YM He, David, N Sawkins, Jessica, C Druce, Jeffrey, Quon, Gerald, Lett, Drew, XY Zheng, Grace, Xu, Tao, Francis Ouellette, BF

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Neutralizing antibody titres in SARS-CoV-2 infections von Lau, Eric H. Y., Tsang, Owen T. Y., Hui, David S. C., Kwan, Mike Y. W., Chan, Wai-hung, Chiu, Susan S., Ko, Ronald L. W., Chan, Kin H., Cheng, Samuel M. S., Perera, Ranawaka A. P. M., Cowling, Benjamin J., Poon, Leo L. M., Peiris, Malik

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SARS-CoV-2 specific T cell responses are lower in children and increase with age and time after infection von Cohen, Carolyn A., Li, Athena P. Y., Hachim, Asmaa, Hui, David S. C., Kwan, Mike Y. W., Tsang, Owen T. Y., Chiu, Susan S., Chan, Wai Hung, Yau, Yat Sun, Kavian, Niloufar, Ma, Fionn N. L., Lau, Eric H. Y., Cheng, Samuel M. S., Poon, Leo L. M., Peiris, Malik, Valkenburg, Sophie A.

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Dapagliflozin in Patients with Chronic Kidney Disease von Heerspink, Hiddo J.L, Stefánsson, Bergur V, Correa-Rotter, Ricardo, Chertow, Glenn M, Greene, Tom, Hou, Fan-Fan, Mann, Johannes F.E, McMurray, John J.V, Lindberg, Magnus, Rossing, Peter, Sjöström, C. David, Toto, Roberto D, Langkilde, Anna-Maria, Wheeler, David C

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Viral Loads and Duration of Viral Shedding in Adult Patients Hospitalized with Influenza von Lee, Nelson, Chan, Paul K. S., Hui, David S. C., Rainer, Timothy H., Wong, Eric, Choi, Kin-Wing, Lui, Grace C. Y., Wong, Bonnie C. K., Wong, Rita Y. K., Lam, Wai-Yip, Chu, Ida M. T., Lai, Raymond W. M., Cockram, Clive S., Sung, Joseph J. Y.

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Neutralizing antibodies against the SARS-CoV-2 Omicron variant BA.1 following homologous and heterologous CoronaVac or BNT162b2 vaccination von Cheng, Samuel M. S., Mok, Chris Ka Pun, Leung, Yonna W. Y., Ng, Susanna S., Chan, Karl C. K., Ko, Fanny W., Chen, Chunke, Yiu, Karen, Lam, Bosco H. S., Lau, Eric H. Y., Chan, Ken K. P., Luk, Leo L. H., Li, John K. C., Tsang, Leo C. H., Poon, Leo L. M., Hui, David S. C., Peiris, Malik

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Education Outcomes in a Duty-Hour Flexibility Trial in Internal Medicine von Desai, Sanjay V, Asch, David A, Bellini, Lisa M, Chaiyachati, Krisda H, Liu, Manqing, Sternberg, Alice L, Tonascia, James, Yeager, Alyssa M, Asch, Jeremy M, Katz, Joel T, Basner, Mathias, Bates, David W, Bilimoria, Karl Y, Dinges, David F, Even-Shoshan, Orit, Shade, David M, Silber, Jeffrey H, Small, Dylan S, Volpp, Kevin G, Shea, Judy A

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Complement C3 Inhibitor Pegcetacoplan for Geographic Atrophy Secondary to Age-Related Macular Degeneration: A Randomized Phase 2 Trial von Liao, David S, Grossi, Federico V, El Mehdi, Delphine, Gerber, Monica R, Brown, David M, Heier, Jeffrey S, Wykoff, Charles C, Singerman, Lawrence J, Abraham, Prema, Grassmann, Felix, Nuernberg, Peter, Weber, Bernhard H F, Deschatelets, Pascal, Kim, Robert Y, Chung, Carol Y, Ribeiro, Ramiro M, Hamdani, Mohamed, Rosenfeld, Philip J, Boyer, David S, Slakter, Jason S, Francois, Cedric G

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Evaluation of a SARS-CoV-2 Surrogate Virus Neutralization Test for Detection of Antibody in Human, Canine, Cat, and Hamster Sera von Perera, Ranawaka A P M, Ko, Ronald, Tsang, Owen T Y, Hui, David S C, Kwan, Mike Y M, Brackman, Christopher J, To, Esther M W, Yen, Hui-Ling, Leung, Kathy, Cheng, Samuel M S, Chan, Kin Ho, Chan, Karl C K, Li, Ka-Chi, Saif, Linda, Barrs, Vanessa R, Wu, Joseph T, Sit, Thomas H C, Poon, Leo L M, Peiris, Malik

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Proposal for Updated Nomenclature and Classification of Potential Causative Mechanism in Patent Foramen Ovale–Associated Stroke von Elgendy, Akram Y, Saver, Jeffrey L, Amin, Zahid, Boudoulas, Konstantinos Dean, Carroll, John D, Elgendy, Islam Y, Grunwald, Iris Q, Gertz, Zachary M, Hijazi, Ziyad M, Horlick, Eric M, Kasner, Scott E, Kent, David M, Kumar, Preetham, Kavinsky, Clifford J, Liebeskind, David S, Lutsep, Helmi, Mojadidi, Mohammad K, Messé, Steven R, Mas, Jean-Louis, Mattle, Heinrich P, Meier, Bernhard, Mahmoud, Ahmad, Mahmoud, Ahmed N, Nietlispach, Fabian, Patel, Nimesh K, Rhodes, John F, Reisman, Mark, Sommer, Robert J, Sievert, Horst, Søndergaard, Lars, Zaman, Muhammad O, Thaler, David, Tobis, Jonathan M

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SARS-CoV-2 accessory proteins reveal distinct serological signatures in children von Hachim, Asmaa, Gu, Haogao, Kavian, Otared, Mori, Masashi, Kwan, Mike Y. W., Chan, Wai Hung, Yau, Yat Sun, Chiu, Susan S., Tsang, Owen T. Y., Hui, David S. C., Mok, Chris K. P., Ma, Fionn N. L., Lau, Eric H. Y., Amarasinghe, Gaya K., Qavi, Abraham J., Cheng, Samuel M. S., Poon, Leo L. M., Peiris, J. S. Malik, Valkenburg, Sophie A., Kavian, Niloufar

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