The axolotl genome and the evolution of key tissue formation regulators von Nowoshilow, Sergej, Schloissnig, Siegfried, Fei, Ji-Feng, Dahl, Andreas, Pang, Andy W. C., Pippel, Martin, Winkler, Sylke, Hastie, Alex R., Young, George, Roscito, Juliana G., Falcon, Francisco, Knapp, Dunja, Powell, Sean, Cruz, Alfredo, Cao, Han, Habermann, Bianca, Hiller, Michael, Tanaka, Elly M., Myers, Eugene W.

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Haplotype-resolved diverse human genomes and integrated analysis of structural variation von Ebert, Peter, Audano, Peter A, Zhu, Qihui, Rodriguez-Martin, Bernardo, Porubsky, David, Bonder, Marc Jan, Sulovari, Arvis, Ebler, Jana, Zhou, Weichen, Serra Mari, Rebecca, Yilmaz, Feyza, Zhao, Xuefang, Hsieh, PingHsun, Lee, Joyce, Kumar, Sushant, Lin, Jiadong, Rausch, Tobias, Chen, Yu, Ren, Jingwen, Santamarina, Martin, Höps, Wolfram, Ashraf, Hufsah, Chuang, Nelson T, Yang, Xiaofei, Munson, Katherine M, Lewis, Alexandra P, Fairley, Susan, Tallon, Luke J, Clarke, Wayne E, Basile, Anna O, Byrska-Bishop, Marta, Corvelo, André, Evani, Uday S, Lu, Tsung-Yu, Chaisson, Mark J P, Chen, Junjie, Li, Chong, Brand, Harrison, Wenger, Aaron M, Ghareghani, Maryam, Harvey, William T, Raeder, Benjamin, Hasenfeld, Patrick, Regier, Allison A, Abel, Haley J, Hall, Ira M, Flicek, Paul, Stegle, Oliver, Gerstein, Mark B, Tubio, Jose M C, Mu, Zepeng, Li, Yang I, Shi, Xinghua, Hastie, Alex R, Ye, Kai, Chong, Zechen, Sanders, Ashley D, Zody, Michael C, Talkowski, Michael E, Mills, Ryan E, Devine, Scott E, Lee, Charles, Korbel, Jan O, Marschall, Tobias, Eichler, Evan E

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High-resolution comparative analysis of great ape genomes von Kronenberg, Zev N, Fiddes, Ian T, Gordon, David, Murali, Shwetha, Cantsilieris, Stuart, Meyerson, Olivia S, Underwood, Jason G, Nelson, Bradley J, Chaisson, Mark J P, Dougherty, Max L, Munson, Katherine M, Hastie, Alex R, Diekhans, Mark, Hormozdiari, Fereydoun, Lorusso, Nicola, Hoekzema, Kendra, Qiu, Ruolan, Clark, Karen, Raja, Archana, Welch, AnneMarie E, Sorensen, Melanie, Baker, Carl, Fulton, Robert S, Armstrong, Joel, Graves-Lindsay, Tina A, Denli, Ahmet M, Hoppe, Emma R, Hsieh, PingHsun, Hill, Christopher M, Pang, Andy Wing Chun, Lee, Joyce, Lam, Ernest T, Dutcher, Susan K, Gage, Fred H, Warren, Wesley C, Shendure, Jay, Haussler, David, Schneider, Valerie A, Cao, Han, Ventura, Mario, Wilson, Richard K, Paten, Benedict, Pollen, Alex, Eichler, Evan E

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Rapid Genome Mapping in Nanochannel Arrays for Highly Complete and Accurate De Novo Sequence Assembly of the Complex Aegilops tauschii Genome von Hastie, Alex R, Dong, Lingli, Smith, Alexis, Finklestein, Jeff, Lam, Ernest T, Huo, Naxin, Cao, Han, Kwok, Pui-Yan, Deal, Karin R, Dvorak, Jan, Luo, Ming-Cheng, Gu, Yong, Xiao, Ming, Nelson, James C

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Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies von Talsania, Keyur, Shen, Tsai-Wei, Chen, Xiongfong, Jaeger, Erich, Li, Zhipan, Chen, Zhong, Chen, Wanqiu, Tran, Bao, Kusko, Rebecca, Wang, Limin, Pang, Andy Wing Chun, Yang, Zhaowei, Choudhari, Sulbha, Colgan, Michael, Fang, Li Tai, Carroll, Andrew, Shetty, Jyoti, Kriga, Yuliya, German, Oksana, Smirnova, Tatyana, Liu, Tiantain, Li, Jing, Kellman, Ben, Hong, Karl, Hastie, Alex R, Natarajan, Aparna, Moshrefi, Ali, Granat, Anastasiya, Truong, Tiffany, Bombardi, Robin, Mankinen, Veronnica, Meerzaman, Daoud, Mason, Christopher E, Collins, Jack, Stahlberg, Eric, Xiao, Chunlin, Wang, Charles, Xiao, Wenming, Zhao, Yongmei

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Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle von Low, Wai Yee, Tearle, Rick, Liu, Ruijie, Koren, Sergey, Rhie, Arang, Bickhart, Derek M., Rosen, Benjamin D., Kronenberg, Zev N., Kingan, Sarah B., Tseng, Elizabeth, Thibaud-Nissen, Françoise, Martin, Fergal J., Billis, Konstantinos, Ghurye, Jay, Hastie, Alex R., Lee, Joyce, Pang, Andy W. C., Heaton, Michael P., Phillippy, Adam M., Hiendleder, Stefan, Smith, Timothy P. L., Williams, John L.

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Genome maps across 26 human populations reveal population-specific patterns of structural variation von Levy-Sakin, Michal, Pastor, Steven, Mostovoy, Yulia, Li, Le, Leung, Alden K. Y., McCaffrey, Jennifer, Young, Eleanor, Lam, Ernest T., Hastie, Alex R., Wong, Karen H. Y., Chung, Claire Y. L., Ma, Walfred, Sibert, Justin, Rajagopalan, Ramakrishnan, Jin, Nana, Chow, Eugene Y. C., Chu, Catherine, Poon, Annie, Lin, Chin, Naguib, Ahmed, Wang, Wei-Ping, Cao, Han, Chan, Ting-Fung, Yip, Kevin Y., Xiao, Ming, Kwok, Pui-Yan

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Comprehensive definition of genome features in Spirodela polyrhiza by high‐depth physical mapping and short‐read DNA sequencing strategies von Michael, Todd P., Bryant, Douglas, Gutierrez, Ryan, Borisjuk, Nikolai, Chu, Philomena, Zhang, Hanzhong, Xia, Jing, Zhou, Junfei, Peng, Hai, El Baidouri, Moaine, Hallers, Boudewijn, Hastie, Alex R., Liang, Tiffany, Acosta, Kenneth, Gilbert, Sarah, McEntee, Connor, Jackson, Scott A., Mockler, Todd C., Zhang, Weixiong, Lam, Eric

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BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes von Staňková, Helena, Hastie, Alex R., Chan, Saki, Vrána, Jan, Tulpová, Zuzana, Kubaláková, Marie, Visendi, Paul, Hayashi, Satomi, Luo, Mingcheng, Batley, Jacqueline, Edwards, David, Doležel, Jaroslav, Šimková, Hana

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Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius von Rosenfeld, Jeffrey A., Reeves, Darryl, Brugler, Mercer R., Narechania, Apurva, Simon, Sabrina, Durrett, Russell, Foox, Jonathan, Shianna, Kevin, Schatz, Michael C., Gandara, Jorge, Afshinnekoo, Ebrahim, Lam, Ernest T., Hastie, Alex R., Chan, Saki, Cao, Han, Saghbini, Michael, Kentsis, Alex, Planet, Paul J., Kholodovych, Vladyslav, Tessler, Michael, Baker, Richard, DeSalle, Rob, Sorkin, Louis N., Kolokotronis, Sergios-Orestis, Siddall, Mark E., Amato, George, Mason, Christopher E.

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Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays von Mak, Angel C Y, Lai, Yvonne Y Y, Lam, Ernest T, Kwok, Tsz-Piu, Leung, Alden K Y, Poon, Annie, Mostovoy, Yulia, Hastie, Alex R, Stedman, William, Anantharaman, Thomas, Andrews, Warren, Zhou, Xiang, Pang, Andy W C, Dai, Heng, Chu, Catherine, Lin, Chin, Wu, Jacob J K, Li, Catherine M L, Li, Jing-Woei, Yim, Aldrin K Y, Chan, Saki, Sibert, Justin, Džakula, Željko, Cao, Han, Yiu, Siu-Ming, Chan, Ting-Fung, Yip, Kevin Y, Xiao, Ming, Kwok, Pui-Yan

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Population genomics of the critically endangered kākāpō von Dussex, Nicolas, van der Valk, Tom, Morales, Hernán E., Wheat, Christopher W., Díez-del-Molino, David, von Seth, Johanna, Foster, Yasmin, Kutschera, Verena E., Guschanski, Katerina, Rhie, Arang, Phillippy, Adam M., Korlach, Jonas, Howe, Kerstin, Chow, William, Pelan, Sarah, Mendes Damas, Joanna D., Lewin, Harris A., Hastie, Alex R., Formenti, Giulio, Fedrigo, Olivier, Guhlin, Joseph, Harrop, Thomas W.R., Le Lec, Marissa F., Dearden, Peter K., Haggerty, Leanne, Martin, Fergal J., Kodali, Vamsi, Thibaud-Nissen, Françoise, Iorns, David, Knapp, Michael, Gemmell, Neil J., Robertson, Fiona, Moorhouse, Ron, Digby, Andrew, Eason, Daryl, Vercoe, Deidre, Howard, Jason, Jarvis, Erich D., Robertson, Bruce C., Dalén, Love

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Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology von Cao, Hongzhi, Hastie, Alex R, Cao, Dandan, Lam, Ernest T, Sun, Yuhui, Huang, Haodong, Liu, Xiao, Lin, Liya, Andrews, Warren, Chan, Saki, Huang, Shujia, Tong, Xin, Requa, Michael, Anantharaman, Thomas, Krogh, Anders, Yang, Huanming, Cao, Han, Xu, Xun

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Overexpression of Q-rich prion-like proteins suppresses polyQ cytotoxicity and alters the polyQ interactome von Ripaud, Leslie, Chumakova, Victoria, Antonin, Matthias, Hastie, Alex R., Pinkert, Stefan, Kömer, Roman, Ruff, Kiersten M., Pappu, Rohit V., Hornburg, Daniel, Mann, Matthias, Hartl, F. Ulrich, Hipp, Mark S.

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Genetic Predisposition to Neurological Complications in Patients with COVID-19 von Sahajpal, Nikhil Shri, Hastie, Alex R, Schieck, Maximilian, Mondal, Ashis K, Felde, Marc, van der Made, Caspar I, Chou, Janet S, Randolph, Adrienne G, Illig, Thomas, Zody, Michael C, Brownstein, Catherine A, Beggs, Alan H, Hoischen, Alexander, Chaubey, Alka, Kolhe, Ravindra

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Analytic Validation of Optical Genome Mapping in Hematological Malignancies von Pang, Andy W C, Kosco, Karena, Sahajpal, Nikhil S, Sridhar, Arthi, Hauenstein, Jen, Clifford, Benjamin, Estabrook, Joey, Chitsazan, Alex D, Sahoo, Trilochan, Iqbal, Anwar, Kolhe, Ravindra, Raca, Gordana, Hastie, Alex R, Chaubey, Alka

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Improved reference genome of Aedes aegypti informs arbovirus vector control von Matthews, Benjamin J., Dudchenko, Olga, Kingan, Sarah B., Koren, Sergey, Antoshechkin, Igor, Crawford, Jacob E., Glassford, William J., Herre, Margaret, Redmond, Seth N., Rose, Noah H., Weedall, Gareth D., Wu, Yang, Batra, Sanjit S., Brito-Sierra, Carlos A., Buckingham, Steven D., Campbell, Corey L., Chan, Saki, Cox, Eric, Evans, Benjamin R., Fansiri, Thanyalak, Filipović, Igor, Fontaine, Albin, Gloria-Soria, Andrea, Hall, Richard, Joardar, Vinita S., Jones, Andrew K., Kay, Raissa G. G., Kodali, Vamsi K., Lee, Joyce, Lycett, Gareth J., Mitchell, Sara N., Muehling, Jill, Murphy, Michael R., Omer, Arina D., Partridge, Frederick A., Peluso, Paul, Aiden, Aviva Presser, Ramasamy, Vidya, Rašić, Gordana, Roy, Sourav, Saavedra-Rodriguez, Karla, Sharan, Shruti, Sharma, Atashi, Smith, Melissa Laird, Turner, Joe, Weakley, Allison M., Zhao, Zhilei, Akbari, Omar S., Black, William C., Cao, Han, Darby, Alistair C., Hill, Catherine A., Johnston, J. Spencer, Murphy, Terence D., Raikhel, Alexander S., Sattelle, David B., Sharakhov, Igor V., White, Bradley J., Zhao, Li, Aiden, Erez Lieberman, Mann, Richard S., Lambrechts, Louis, Powell, Jeffrey R., Sharakhova, Maria V., Tu, Zhijian, Robertson, Hugh M., McBride, Carolyn S., Hastie, Alex R., Korlach, Jonas, Neafsey, Daniel E., Phillippy, Adam M., Vosshall, Leslie B.

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Fully Phased Sequence of a Diploid Human Genome Determined de Novo from the DNA of a Single Individual von Soifer, llya, Fong, Nicole L, Yi, Nelda, Ireland, Andrea T, Lam, Irene, Sooknah, Matthew, Paw, Jonathan S, Peluso, Paul, Concepcion, Gregory T, Rank, David, Hastie, Alex R, Jojic, Vladimir, Ruby, J Graham, Botstein, David, Roy, Margaret A

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A hybrid approach for de novo human genome sequence assembly and phasing von Mostovoy, Yulia, Levy-Sakin, Michal, Lam, Jessica, Lam, Ernest T, Hastie, Alex R, Marks, Patrick, Lee, Joyce, Chu, Catherine, Lin, Chin, Džakula, Željko, Cao, Han, Schlebusch, Stephen A, Giorda, Kristina, Schnall-Levin, Michael, Wall, Jeffrey D, Kwok, Pui-Yan

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Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome von Bickhart, Derek M, Rosen, Benjamin D, Koren, Sergey, Sayre, Brian L, Hastie, Alex R, Chan, Saki, Lee, Joyce, Lam, Ernest T, Liachko, Ivan, Sullivan, Shawn T, Burton, Joshua N, Huson, Heather J, Nystrom, John C, Kelley, Christy M, Hutchison, Jana L, Zhou, Yang, Sun, Jiajie, Crisà, Alessandra, Ponce de León, F Abel, Schwartz, John C, Hammond, John A, Waldbieser, Geoffrey C, Schroeder, Steven G, Liu, George E, Dunham, Maitreya J, Shendure, Jay, Sonstegard, Tad S, Phillippy, Adam M, Van Tassell, Curtis P, Smith, Timothy P L

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