Using structural variants to understand the ecological and evolutionary dynamics of fungal plant pathogens von Hartmann, Fanny E.

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Distinct Trajectories of Massive Recent Gene Gains and Losses in Populations of a Microbial Eukaryotic Pathogen von Hartmann, Fanny E, Croll, Daniel

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Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome von Plissonneau, Clémence, Hartmann, Fanny E, Croll, Daniel

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The Genome Biology of Effector Gene Evolution in Filamentous Plant Pathogens von Sánchez-Vallet, Andrea, Fouché, Simone, Fudal, Isabelle, Hartmann, Fanny E, Soyer, Jessica L, Tellier, Aurélien, Croll, Daniel

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A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements von Hartmann, Fanny E, Sánchez-Vallet, Andrea, McDonald, Bruce A, Croll, Daniel

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Genome‐wide evidence for divergent selection between populations of a major agricultural pathogen von Hartmann, Fanny E., McDonald, Bruce A., Croll, Daniel

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Why do sex chromosomes progressively lose recombination? von Jay, Paul, Jeffries, Daniel, Hartmann, Fanny E., Véber, Amandine, Giraud, Tatiana

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A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch von Meile, Lukas, Croll, Daniel, Brunner, Patrick C., Plissonneau, Clémence, Hartmann, Fanny E., McDonald, Bruce A., Sánchez‐Vallet, Andrea

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A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene von Zhong, Ziming, Marcel, Thierry C., Hartmann, Fanny E., Ma, Xin, Plissonneau, Clémence, Zala, Marcello, Ducasse, Aurélie, Confais, Johann, Compain, Jérôme, Lapalu, Nicolas, Amselem, Joëlle, McDonald, Bruce A., Croll, Daniel, Palma‐Guerrero, Javier

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Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores von Vittorelli, Nina, Rodríguez de la Vega, Ricardo C, Snirc, Alodie, Levert, Emilie, Gautier, Valérie, Lalanne, Christophe, De Filippo, Elsa, Gladieux, Pierre, Guillou, Sonia, Zhang, Yu, Tejomurthula, Sravanthi, Grigoriev, Igor V, Debuchy, Robert, Silar, Philippe, Giraud, Tatiana, Hartmann, Fanny E

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Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen von Badet, Thomas, Fouché, Simone, Hartmann, Fanny E., Zala, Marcello, Croll, Daniel

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Using Population and Comparative Genomics to Understand the Genetic Basis of Effector-Driven Fungal Pathogen Evolution von Plissonneau, Clémence, Benevenuto, Juliana, Mohd-Assaad, Norfarhan, Fouché, Simone, Hartmann, Fanny E, Croll, Daniel

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Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat von Krishnan, Parvathy, Meile, Lukas, Plissonneau, Clémence, Ma, Xin, Hartmann, Fanny E, Croll, Daniel, McDonald, Bruce A, Sánchez-Vallet, Andrea

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Recombination suppression and evolutionary strata around mating-type loci in fungi: documenting patterns and understanding evolutionary and mechanistic causes von Hartmann, Fanny E., Duhamel, Marine, Carpentier, Fantin, Hood, Michael E., Foulongne-Oriol, Marie, Silar, Philippe, Malagnac, Fabienne, Grognet, Pierre, Giraud, Tatiana

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A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen von Oggenfuss, Ursula, Badet, Thomas, Wicker, Thomas, Hartmann, Fanny E, Singh, Nikhil Kumar, Abraham, Leen, Karisto, Petteri, Vonlanthen, Tiziana, Mundt, Christopher, McDonald, Bruce A, Croll, Daniel

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Comparative Transcriptome Analyses in Zymoseptoria tritici Reveal Significant Differences in Gene Expression Among Strains During Plant Infection von Palma-Guerrero, Javier, Ma, Xin, Torriani, Stefano F F, Zala, Marcello, Francisco, Carolina S, Hartmann, Fanny E, Croll, Daniel, McDonald, Bruce A

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Multiple convergent supergene evolution events in mating-type chromosomes von Branco, Sara, Carpentier, Fantin, Rodríguez de la Vega, Ricardo C., Badouin, Hélène, Snirc, Alodie, Le Prieur, Stéphanie, Coelho, Marco A., de Vienne, Damien M., Hartmann, Fanny E., Begerow, Dominik, Hood, Michael E., Giraud, Tatiana

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Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments von Dutta, Anik, Hartmann, Fanny E., Francisco, Carolina Sardinha, McDonald, Bruce A., Croll, Daniel

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The complex genomic basis of rapid convergent adaptation to pesticides across continents in a fungal plant pathogen von Hartmann, Fanny E., Vonlanthen, Tiziana, Singh, Nikhil Kumar, McDonald, Megan C., Milgate, Andrew, Croll, Daniel

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Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici von Stewart, Ethan l., Croll, Daniel, Lendenmann, Mark H., Sanchez‐Vallet, Andrea, Hartmann, Fanny E., Palma‐Guerrero, Javier, Ma, Xin, McDonald, Bruce A.

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