Temporal development of the gut microbiome in early childhood from the TEDDY study von Stewart, Christopher J., Ajami, Nadim J., O’Brien, Jacqueline L., Hutchinson, Diane S., Smith, Daniel P., Wong, Matthew C., Ross, Matthew C., Lloyd, Richard E., Doddapaneni, HarshaVardhan, Metcalf, Ginger A., Muzny, Donna, Gibbs, Richard A., Vatanen, Tommi, Huttenhower, Curtis, Xavier, Ramnik J., Rewers, Marian, Hagopian, William, Toppari, Jorma, Ziegler, Anette-G., She, Jin-Xiong, Akolkar, Beena, Lernmark, Ake, Hyoty, Heikki, Vehik, Kendra, Krischer, Jeffrey P., Petrosino, Joseph F.

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PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation von Mahmoud, Medhat, Doddapaneni, Harshavardhan, Timp, Winston, Sedlazeck, Fritz J

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Molecular profiling predicts meningioma recurrence and reveals loss of DREAM complex repression in aggressive tumors von Patel, Akash J., Wan, Ying-Wooi, Al-Ouran, Rami, Revelli, Jean-Pierre, Cardenas, Maria F., Oneissi, Mazen, Xi, Liu, Jalali, Ali, Magnotti, John F., Muzny, Donna M., Doddapaneni, HarshaVardhan, Sebastian, Sherly, Heck, Kent A., Goodman, J. Clay, Gopinath, Shankar P., Liu, Zhandong, Rao, Ganesh, Plon, Sharon E., Yoshor, Daniel, Wheeler, David A., Zoghbi, Huda Y., Klisch, Tiemo J.

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Genetic architecture of laterality defects revealed by whole exome sequencing von Li, Alexander H, Hanchard, Neil A, Azamian, Mahshid, D'Alessandro, Lisa C A, Coban-Akdemir, Zeynep, Lopez, Keila N, Hall, Nancy J, Dickerson, Heather, Nicosia, Annarita, Fernbach, Susan, Boone, Philip M, Gambin, Tomaz, Karaca, Ender, Gu, Shen, Yuan, Bo, Jhangiani, Shalini N, Doddapaneni, HarshaVardhan, Hu, Jianhong, Dinh, Huyen, Jayaseelan, Joy, Muzny, Donna, Lalani, Seema, Towbin, Jeffrey, Penny, Daniel, Fraser, Charles, Martin, James, Lupski, James R, Gibbs, Richard A, Boerwinkle, Eric, Ware, Stephanie M, Belmont, John W

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The house spider genome reveals an ancient whole-genome duplication during arachnid evolution von Schwager, Evelyn E, Sharma, Prashant P, Clarke, Thomas, Leite, Daniel J, Wierschin, Torsten, Pechmann, Matthias, Akiyama-Oda, Yasuko, Esposito, Lauren, Bechsgaard, Jesper, Bilde, Trine, Buffry, Alexandra D, Chao, Hsu, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dugan, Shannon, Eibner, Cornelius, Extavour, Cassandra G, Funch, Peter, Garb, Jessica, Gonzalez, Luis B, Gonzalez, Vanessa L, Griffiths-Jones, Sam, Han, Yi, Hayashi, Cheryl, Hilbrant, Maarten, Hughes, Daniel S T, Janssen, Ralf, Lee, Sandra L, Maeso, Ignacio, Murali, Shwetha C, Muzny, Donna M, Nunes da Fonseca, Rodrigo, Paese, Christian L B, Qu, Jiaxin, Ronshaugen, Matthew, Schomburg, Christoph, Schönauer, Anna, Stollewerk, Angelika, Torres-Oliva, Montserrat, Turetzek, Natascha, Vanthournout, Bram, Werren, John H, Wolff, Carsten, Worley, Kim C, Bucher, Gregor, Gibbs, Richard A, Coddington, Jonathan, Oda, Hiroki, Stanke, Mario, Ayoub, Nadia A, Prpic, Nikola-Michael, Flot, Jean-François, Posnien, Nico, Richards, Stephen, McGregor, Alistair P

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Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication von Shinbrot, Eve, Henninger, Erin E, Weinhold, Nils, Covington, Kyle R, Göksenin, A Yasemin, Schultz, Nikolaus, Chao, Hsu, Doddapaneni, HarshaVardhan, Muzny, Donna M, Gibbs, Richard A, Sander, Chris, Pursell, Zachary F, Wheeler, David A

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Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda von Eyun, Seong-Il, Soh, Ho Young, Posavi, Marijan, Munro, James B, Hughes, Daniel S T, Murali, Shwetha C, Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L, Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, HarshaVardhan, Worley, Kim C, Muzny, Donna M, Park, Eun-Ok, Silva, Joana C, Gibbs, Richard A, Richards, Stephen, Lee, Carol Eunmi

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Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design von Rokita, Jo Lynne, Rathi, Komal S., Cardenas, Maria F., Upton, Kristen A., Jayaseelan, Joy, Cross, Katherine L., Pfeil, Jacob, Egolf, Laura E., Way, Gregory P., Farrel, Alvin, Kendsersky, Nathan M., Patel, Khushbu, Gaonkar, Krutika S., Modi, Apexa, Berko, Esther R., Lopez, Gonzalo, Vaksman, Zalman, Mayoh, Chelsea, Nance, Jonas, McCoy, Kristyn, Haber, Michelle, Evans, Kathryn, McCalmont, Hannah, Bendak, Katerina, Böhm, Julia W., Marshall, Glenn M., Tyrrell, Vanessa, Kalletla, Karthik, Braun, Frank K., Qi, Lin, Du, Yunchen, Zhang, Huiyuan, Lindsay, Holly B., Zhao, Sibo, Shu, Jack, Baxter, Patricia, Morton, Christopher, Kurmashev, Dias, Zheng, Siyuan, Chen, Yidong, Bowen, Jay, Bryan, Anthony C., Leraas, Kristen M., Coppens, Sara E., Doddapaneni, HarshaVardhan, Momin, Zeineen, Zhang, Wendong, Sacks, Gregory I., Hart, Lori S., Krytska, Kateryna, Mosse, Yael P., Gatto, Gregory J., Sanchez, Yolanda, Greene, Casey S., Diskin, Sharon J., Vaske, Olena Morozova, Haussler, David, Gastier-Foster, Julie M., Kolb, E. Anders, Gorlick, Richard, Li, Xiao-Nan, Reynolds, C. Patrick, Kurmasheva, Raushan T., Houghton, Peter J., Smith, Malcolm A., Lock, Richard B., Raman, Pichai, Wheeler, David A., Maris, John M.

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Mutational landscape of aggressive cutaneous squamous cell carcinoma von Pickering, Curtis R, Zhou, Jane H, Lee, J Jack, Drummond, Jennifer A, Peng, S Andrew, Saade, Rami E, Tsai, Kenneth Y, Curry, Jonathan L, Tetzlaff, Michael T, Lai, Stephen Y, Yu, Jun, Muzny, Donna M, Doddapaneni, Harshavardhan, Shinbrot, Eve, Covington, Kyle R, Zhang, Jianhua, Seth, Sahil, Caulin, Carlos, Clayman, Gary L, El-Naggar, Adel K, Gibbs, Richard A, Weber, Randal S, Myers, Jeffrey N, Wheeler, David A, Frederick, Mitchell J

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Mutually exclusive recurrent somatic mutations in MAP2K1 and BRAF support a central role for ERK activation in LCH pathogenesis von Chakraborty, Rikhia, Hampton, Oliver A., Shen, Xiaoyun, Simko, Stephen J., Shih, Albert, Abhyankar, Harshal, Lim, Karen Phaik Har, Covington, Kyle R., Trevino, Lisa, Dewal, Ninad, Muzny, Donna M., Doddapaneni, Harshavardhan, Hu, Jianhong, Wang, Linghua, Lupo, Philip J., Hicks, M. John, Bonilla, Diana L., Dwyer, Karen C., Berres, Marie-Luise, Poulikakos, Poulikos I., Merad, Miriam, McClain, Kenneth L., Wheeler, David A., Allen, Carl E., Parsons, D. Williams

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Chemistry-First Approach for Nomination of Personalized Treatment in Lung Cancer von McMillan, Elizabeth A., Ryu, Myung-Jeom, Diep, Caroline H., Mendiratta, Saurabh, Clemenceau, Jean R., Vaden, Rachel M., Kim, Ju-Hwa, Motoyaji, Takashi, Covington, Kyle R., Peyton, Michael, Huffman, Kenneth, Wu, Xiaofeng, Girard, Luc, Sung, Yeojin, Chen, Pei-Hsaun, Mallipeddi, Prema L., Lee, Joo Young, Hanson, Jordan, Voruganti, Sukesh, Yu, Yunku, Park, Sunho, Sudderth, Jessica, DeSevo, Christopher, Muzny, Donna M., Doddapaneni, HarshaVardhan, Gazdar, Adi, Gibbs, Richard A., Hwang, Tae-Hyun, Heymach, John V., Wistuba, Ignacio, Coombes, Kevin R., Williams, Noelle S., Wheeler, David A., MacMillan, John B., Deberardinis, Ralph J., Roth, Michael G., Posner, Bruce A., Minna, John D., Kim, Hyun Seok, White, Michael A.

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Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney von Roy, Angshumoy, Kumar, Vijetha, Zorman, Barry, Fang, Erica, Haines, Katherine M., Doddapaneni, HarshaVardhan, Hampton, Oliver A., White, Simon, Bavle, Abhishek A., Patel, Nimesh R., Eldin, Karen W., John Hicks, M., Rakheja, Dinesh, Leavey, Patrick J., Skapek, Stephen X., Amatruda, James F., Nuchtern, Jed G., Chintagumpala, Murali M., Wheeler, David A., Plon, Sharon E., Sumazin, Pavel, Parsons, D. Williams

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Complete Genome Sequence of Citrus Huanglongbing Bacterium, 'Candidatus Liberibacter asiaticus' Obtained Through Metagenomics von Duan, Yongping, Zhou, Lijuan, Hall, David G, Li, Wenbin, Doddapaneni, Harshavardhan, Lin, Hong, Liu, Li, Vahling, Cheryl M, Gabriel, Dean W, Williams, Kelly P, Dickerman, Allan, Sun, Yijun, Gottwald,Tim

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Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs) von Syed, Khajamohiddin, Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Lam, Ying Wai, Yadav, Jagjit S.

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Cohort Profile: The Right Drug, Right Dose, Right Time: Using Genomic Data to Individualize Treatment Protocol (RIGHT Protocol) von Bielinski, Suzette J, St Sauver, Jennifer L, Olson, Janet E, Larson, Nicholas B, Black, John L, Scherer, Steven E, Bernard, Matthew E, Boerwinkle, Eric, Borah, Bijan J, Caraballo, Pedro J, Curry, Timothy B, Doddapaneni, HarshaVardhan, Formea, Christine M, Freimuth, Robert R, Gibbs, Richard A, Giri, Jyothsna, Hathcock, Matthew A, Hu, Jianhong, Jacobson, Debra J, Jones, Leila A, Kalla, Sara, Koep, Tyler H, Korchina, Viktoriya, Kovar, Christie L, Lee, Sandra, Liu, Hongfang, Matey, Eric T, McGree, Michaela E, McAllister, Tammy M, Moyer, Ann M, Muzny, Donna M, Nicholson, Wayne T, Oyen, Lance J, Qin, Xiang, Raj, Ritika, Roger, Véronique L, Rohrer Vitek, Carolyn R, Ross, Jason L, Sharp, Richard R, Takahashi, Paul Y, Venner, Eric, Walker, Kimberly, Wang, Liwei, Wang, Qiaoyan, Wright, Jessica A, Wu, Tsung-Jung, Wang, Liewei, Weinshilboum, Richard M

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Somatic mutations of esophageal adenocarcinoma: a comparison between Black and White patients von Lim, Hyeyeun, Gingras, Marie-Claude, Zhao, Jing, Byun, Jinyoung, Castro, Patricia D., Tsavachidis, Spiridon, Hu, Jianhong, Doddapaneni, Harshavardhan, Han, Yi, Muzny, Donna M., Gibbs, Richard A., Amos, Christopher I., Thrift, Aaron P.

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Complete Genome Sequence of ‘Candidatus Liberibacter solanacearum’, the Bacterium Associated with Potato Zebra Chip Disease von Lin, Hong, Lou, Binghai, Glynn, Jonathan M, Doddapaneni, Harshavardhan, Civerolo, Edwin L, Chen, Chuanwu, Duan, Yongping, Zhou, Lijuan, Vahling, Cheryl M, Yang, Ching-Hong

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A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus von Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Fu, Bolei, Cullen, Dan

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Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium: evidence for gene duplications and e... von Doddapaneni, Harshavardhan, Chakraborty, Ranajit, Yadav, Jagjit S

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Primary Infection May Be an Underlying Factor Contributing to Lethal Hemorrhagic Disease Caused by Elephant Endotheliotropic Herpesvirus 3 in African Elephants ( Loxodonta africana... von Pursell, Taylor, Spencer Clinton, Jennifer L, Tan, Jie, Peng, Rongsheng, Qin, Xiang, Doddapaneni, Harshavardhan, Menon, Vipin, Momin, Zeineen, Kottapalli, Kavya, Howard, Lauren, Latimer, Erin, Heaggans, Sarah, Hayward, Gary S, Ling, Paul D

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