A novel approach for detecting Salmonella enterica strains frequently attributed to human illness-development and validation of the highly pathogenic Salmonella (HPS) multiplex PCR... von Harhay, Dayna M, Brader, Kerry D, Katz, Tatum S, Harhay, Gregory P, Bono, James L, Bosilevac, Joseph M, Wheeler, Tommy L

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Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing von Myer, Phillip R., McDaneld, Tara G., Kuehn, Larry A., Dedonder, Keith D., Apley, Michael D., Capik, Sarah F., Lubbers, Brian V., Harhay, Gregory P., Harhay, Dayna M., Keele, John W., Henniger, Madison T., Clemmons, Brooke A., Smith, Timothy P. L.

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Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition von Weinroth, Margaret D, Clawson, Michael L, Harhay, Gregory P, Eppinger, Mark, Harhay, Dayna M, Smith, Timothy P L, Bono, James L

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Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle von Durso, Lisa M, Harhay, Gregory P, Smith, Timothy P.L, Bono, James L, DeSantis, Todd Z, Harhay, Dayna M, Andersen, Gary L, Keen, James E, Laegreid, William W, Clawson, Michael L

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Recent Emergence of Bovine Coronavirus Variants with Mutations in the Hemagglutinin-Esterase Receptor Binding Domain in U.S. Cattle von Workman, Aspen M, McDaneld, Tara G, Harhay, Gregory P, Das, Subha, Loy, John Dustin, Hause, Benjamin M

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Reduced lentivirus susceptibility in sheep with TMEM154 mutations von Heaton, Michael P, Clawson, Michael L, Chitko-Mckown, Carol G, Leymaster, Kreg A, Smith, Timothy P L, Harhay, Gregory P, White, Stephen N, Herrmann-Hoesing, Lynn M, Mousel, Michelle R, Lewis, Gregory S, Kalbfleisch, Theodore S, Keen, James E, Laegreid, William W

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A Conserved Histophilus somni 23S Intervening Sequence Yields Functional, Fragmented 23S rRNA von Harhay, Gregory P, Harhay, Dayna M, Brader, Kerry D, Smith, Timothy P L

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Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi von Anton, Brian P, Harhay, Gregory P, Smith, Timothy P L, Blom, Jochen, Roberts, Richard J

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Evaluating Large Spontaneous Deletions in a Bovine Cell Line Selected for Bovine Viral Diarrhea Virus Resistance von Workman, Aspen M, Heaton, Michael P, Webster, Dennis A, Harhay, Gregory P, Kalbfleisch, Theodore S, Smith, Timothy P L, Falkenberg, Shollie M, Carlson, Daniel F, Sonstegard, Tad S

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Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Con... von Nguyen, Scott V, Harhay, Gregory P, Bono, James L, Smith, Timothy P L, Harhay, Dayna M

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Reactomes of porcine alveolar macrophages infected with porcine reproductive and respiratory syndrome virus von Jiang, Zhihua, Zhou, Xiang, Michal, Jennifer J, Wu, Xiao-Lin, Zhang, Lifan, Zhang, Ming, Ding, Bo, Liu, Bang, Manoranjan, Valipuram S, Neill, John D, Harhay, Gregory P, Kehrli, Jr, Marcus E, Miller, Laura C

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Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep von Heaton, Michael P, Kalbfleisch, Theodore S, Petrik, Dustin T, Simpson, Barry, Kijas, James W, Clawson, Michael L, Chitko-McKown, Carol G, Harhay, Gregory P, Leymaster, Kreg A

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Association of ARRDC3 and NFIA variants with bovine congestive heart failure in feedlot cattle [version 2; peer review: 2 approved, 1 approved with reservations] von Heaton, Michael P., Harhay, Gregory P., Bassett, Adam S., Clark, Halden J., Carlson, Jaden M., Jobman, Erin E., Sadd, Helen R., Pelster, Madeline C., Workman, Aspen M., Kuehn, Larry A., Kalbfleisch, Theodore S., Piscatelli, Heather, Carrie, Michael, Krafsur, Greta M., Grotelueschen, Dale M., Vander Ley, Brian L.

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Cytokine and Haptoglobin Profiles From Shipping Through Sickness and Recovery in Metaphylaxis- or Un-Treated Cattle von Chitko-McKown, Carol G, Bennett, Gary L, Kuehn, Larry A, DeDonder, Keith D, Apley, Michael D, Harhay, Gregory P, Clawson, Michael L, Workman, Aspen M, White, Bradley J, Larson, Robert L, Capik, Sarah F, Lubbers, Brian V

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Next-Generation Sequencing of the Porcine Skeletal Muscle Transcriptome for Computational Prediction of MicroRNA Gene Targets von McDaneld, Tara G, Smith, Tim P. L, Harhay, Gregory P, Wiedmann, Ralph T, Liu, Zhanjiang

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Two bovine hepacivirus genome sequences from U.S. cattle von Workman, Aspen M., Harhay, Gregory P., Groves, John T., Vander Ley, Brian L.

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Reducing assembly complexity of microbial genomes with single-molecule sequencing von Koren, Sergey, Harhay, Gregory P, Smith, Timothy P L, Bono, James L, Harhay, Dayna M, Mcvey, Scott D, Radune, Diana, Bergman, Nicholas H, Phillippy, Adam M

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Rapid estimation of Salmonella enterica contamination level in ground beef – Application of the time-to-positivity method using a combination of molecular detection and direct plat... von Harhay, Dayna M., Weinroth, Margaret D., Bono, James L., Harhay, Gregory P., Bosilevac, Joseph M.

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Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes von Clawson, Michael L, Murray, Robert W, Sweeney, Michael T, Apley, Michael D, DeDonder, Keith D, Capik, Sarah F, Larson, Robert L, Lubbers, Brian V, White, Brad J, Kalbfleisch, Theodore S, Schuller, Gennie, Dickey, Aaron M, Harhay, Gregory P, Heaton, Michael P, Chitko-McKown, Carol G, Brichta-Harhay, Dayna M, Bono, James L, Smith, Timothy P L

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A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats von Harhay, Gregory P., Harhay, Dayna M., Bono, James L., Capik, Sarah F., DeDonder, Keith D., Apley, Michael D., Lubbers, Brian V., White, Bradley J., Larson, Robert L., Smith, Timothy P. L.

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