Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing von Myer, Phillip R., McDaneld, Tara G., Kuehn, Larry A., Dedonder, Keith D., Apley, Michael D., Capik, Sarah F., Lubbers, Brian V., Harhay, Gregory P., Harhay, Dayna M., Keele, John W., Henniger, Madison T., Clemmons, Brooke A., Smith, Timothy P. L.

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Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition von Weinroth, Margaret D, Clawson, Michael L, Harhay, Gregory P, Eppinger, Mark, Harhay, Dayna M, Smith, Timothy P L, Bono, James L

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Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle von Durso, Lisa M, Harhay, Gregory P, Smith, Timothy P.L, Bono, James L, DeSantis, Todd Z, Harhay, Dayna M, Andersen, Gary L, Keen, James E, Laegreid, William W, Clawson, Michael L

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Reducing assembly complexity of microbial genomes with single-molecule sequencing von Koren, Sergey, Harhay, Gregory P, Smith, Timothy P L, Bono, James L, Harhay, Dayna M, Mcvey, Scott D, Radune, Diana, Bergman, Nicholas H, Phillippy, Adam M

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Reduced lentivirus susceptibility in sheep with TMEM154 mutations von Heaton, Michael P, Clawson, Michael L, Chitko-Mckown, Carol G, Leymaster, Kreg A, Smith, Timothy P L, Harhay, Gregory P, White, Stephen N, Herrmann-Hoesing, Lynn M, Mousel, Michelle R, Lewis, Gregory S, Kalbfleisch, Theodore S, Keen, James E, Laegreid, William W

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Rapid estimation of Salmonella enterica contamination level in ground beef – Application of the time-to-positivity method using a combination of molecular detection and direct plat... von Harhay, Dayna M., Weinroth, Margaret D., Bono, James L., Harhay, Gregory P., Bosilevac, Joseph M.

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Two bovine hepacivirus genome sequences from U.S. cattle von Workman, Aspen M., Harhay, Gregory P., Groves, John T., Vander Ley, Brian L.

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Recent Emergence of Bovine Coronavirus Variants with Mutations in the Hemagglutinin-Esterase Receptor Binding Domain in U.S. Cattle von Workman, Aspen M, McDaneld, Tara G, Harhay, Gregory P, Das, Subha, Loy, John Dustin, Hause, Benjamin M

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Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes von Clawson, Michael L, Murray, Robert W, Sweeney, Michael T, Apley, Michael D, DeDonder, Keith D, Capik, Sarah F, Larson, Robert L, Lubbers, Brian V, White, Brad J, Kalbfleisch, Theodore S, Schuller, Gennie, Dickey, Aaron M, Harhay, Gregory P, Heaton, Michael P, Chitko-McKown, Carol G, Brichta-Harhay, Dayna M, Bono, James L, Smith, Timothy P L

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Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi von Anton, Brian P, Harhay, Gregory P, Smith, Timothy P L, Blom, Jochen, Roberts, Richard J

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A Conserved Histophilus somni 23S Intervening Sequence Yields Functional, Fragmented 23S rRNA von Harhay, Gregory P., Harhay, Dayna M., Brader, Kerry D., Smith, Timothy P. L.

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A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats von Harhay, Gregory P., Harhay, Dayna M., Bono, James L., Capik, Sarah F., DeDonder, Keith D., Apley, Michael D., Lubbers, Brian V., White, Bradley J., Larson, Robert L., Smith, Timothy P. L.

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Reactomes of porcine alveolar macrophages infected with porcine reproductive and respiratory syndrome virus von Jiang, Zhihua, Zhou, Xiang, Michal, Jennifer J, Wu, Xiao-Lin, Zhang, Lifan, Zhang, Ming, Ding, Bo, Liu, Bang, Manoranjan, Valipuram S, Neill, John D, Harhay, Gregory P, Kehrli, Jr, Marcus E, Miller, Laura C

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Publisher Correction: A Computational Method to Quantify the Effects of Slipped Strand Mispairing on Bacterial Tetranucleotide Repeats von Harhay, Gregory P., Harhay, Dayna M., Bono, James L., Capik, Sarah F., DeDonder, Keith D., Apley, Michael D., Lubbers, Brian V., White, Bradley J., Larson, Robert L., Smith, Timothy P. L.

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Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep von Heaton, Michael P, Kalbfleisch, Theodore S, Petrik, Dustin T, Simpson, Barry, Kijas, James W, Clawson, Michael L, Chitko-McKown, Carol G, Harhay, Gregory P, Leymaster, Kreg A

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Evaluating Large Spontaneous Deletions in a Bovine Cell Line Selected for Bovine Viral Diarrhea Virus Resistance von Workman, Aspen M., Heaton, Michael P., Webster, Dennis A., Harhay, Gregory P., Kalbfleisch, Theodore S., Smith, Timothy P. L., Falkenberg, Shollie M., Carlson, Daniel F., Sonstegard, Tad S.

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Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Con... von Nguyen, Scott V, Harhay, Gregory P, Bono, James L, Smith, Timothy P L, Harhay, Dayna M

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Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach von Durso, Lisa M., Harhay, Gregory P., Bono, James L., Smith, Timothy P.L.

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Detection of bovine inflammatory cytokines IL-1β, IL-6, and TNF-α with a multiplex electrochemiluminescent assay platform von Chitko-McKown, Carol G., Bierman, Stacy L., Kuehn, Larry A., Bennett, Gary L., DeDonder, Keith D., Apley, Michael D., Harhay, Gregory P., Clawson, Michael L., White, Bradley J., Larson, Robert L., Capik, Sarah F., Lubbers, Brian V.

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Observations on macrolide resistance and susceptibility testing performance in field isolates collected from clinical bovine respiratory disease cases von DeDonder, Keith D., Harhay, Dayna M., Apley, Michael D., Lubbers, Brian V., Clawson, Michael L., Schuller, Gennie, Harhay, Gregory P., White, Brad J., Larson, Robert L., Capik, Sarah F., Riviere, Jim E., Kalbfleisch, Ted, Tessman, Ronald K.

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