The effects of chromatin organization on variation in mutation rates in the genome von Makova, Kateryna D., Hardison, Ross C.

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Genomic approaches towards finding cis-regulatory modules in animals von Hardison, Ross C., Taylor, James

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HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient von Yang, Tao, Zhang, Feipeng, Yardımcı, Galip Gürkan, Song, Fan, Hardison, Ross C, Noble, William Stafford, Yue, Feng, Li, Qunhua

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Tissue-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1 von Kadauke, Stephan, Udugama, Maheshi I., Pawlicki, Jan M., Achtman, Jordan C., Jain, Deepti P., Cheng, Yong, Hardison, Ross C., Blobel, Gerd A.

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Updates of the HbVar database of human hemoglobin variants and thalassemia mutations von Giardine, Belinda, Borg, Joseph, Viennas, Emmanouil, Pavlidis, Cristiana, Moradkhani, Kamran, Joly, Philippe, Bartsakoulia, Marina, Riemer, Cathy, Miller, Webb, Tzimas, Giannis, Wajcman, Henri, Hardison, Ross C, Patrinos, George P

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Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation von Bartman, Caroline R., Hamagami, Nicole, Keller, Cheryl A., Giardine, Belinda, Hardison, Ross C., Blobel, Gerd A., Raj, Arjun

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Chromatin structure dynamics during the mitosis-to-G1 phase transition von Zhang, Haoyue, Emerson, Daniel J., Gilgenast, Thomas G., Titus, Katelyn R., Lan, Yemin, Huang, Peng, Zhang, Di, Wang, Hongxin, Keller, Cheryl A., Giardine, Belinda, Hardison, Ross C., Phillips-Cremins, Jennifer E., Blobel, Gerd A.

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Integrative detection and analysis of structural variation in cancer genomes von Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Yardımcı, Galip Gürkan, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Noble, William Stafford, Dekker, Job, Gilbert, David M., Yue, Feng

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Topologically associating domains are stable units of replication-timing regulation von Pope, Benjamin D., Ryba, Tyrone, Dileep, Vishnu, Yue, Feng, Wu, Weisheng, Denas, Olgert, Vera, Daniel L., Wang, Yanli, Hansen, R. Scott, Canfield, Theresa K., Thurman, Robert E., Cheng, Yong, Gülsoy, Günhan, Dennis, Jonathan H., Snyder, Michael P., Stamatoyannopoulos, John A., Taylor, James, Hardison, Ross C., Kahveci, Tamer, Ren, Bing, Gilbert, David M.

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What fraction of the human genome is functional? von Ponting, Chris P, Hardison, Ross C

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Jointly characterizing epigenetic dynamics across multiple human cell types von Zhang, Yu, An, Lin, Yue, Feng, Hardison, Ross C

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The changing mouse embryo transcriptome at whole tissue and single-cell resolution von He, Peng, Williams, Brian A., Trout, Diane, Marinov, Georgi K., Amrhein, Henry, Berghella, Libera, Goh, Say-Tar, Plajzer-Frick, Ingrid, Afzal, Veena, Pennacchio, Len A., Dickel, Diane E., Visel, Axel, Ren, Bing, Hardison, Ross C., Zhang, Yu, Wold, Barbara J.

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OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries von An, Lin, Yang, Tao, Yang, Jiahao, Nuebler, Johannes, Xiang, Guanjue, Hardison, Ross C, Li, Qunhua, Zhang, Yu

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Unlinking an lncRNA from Its Associated cis Element von Paralkar, Vikram R., Taborda, Cristian C., Huang, Peng, Yao, Yu, Kossenkov, Andrew V., Prasad, Rishi, Luan, Jing, Davies, James O.J., Hughes, Jim R., Hardison, Ross C., Blobel, Gerd A., Weiss, Mitchell J.

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Genome-wide Epigenetic Data Facilitate Understanding of Disease Susceptibility Association Studies von Hardison, Ross C.

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Integrative annotation of chromatin elements from ENCODE data von Hoffman, Michael M, Ernst, Jason, Wilder, Steven P, Kundaje, Anshul, Harris, Robert S, Libbrecht, Max, Giardine, Belinda, Ellenbogen, Paul M, Bilmes, Jeffrey A, Birney, Ewan, Hardison, Ross C, Dunham, Ian, Kellis, Manolis, Noble, William Stafford

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Defining functional DNA elements in the human genome von Kellis, Manolis, Wold, Barbara, Snyderd, Michael P., Bernstein, Bradley E., Kundaje, Anshul, Marinov, Georgi K., Ward, Lucas D., Birney, Ewan, Crawford, Gregory E., Dekker, Job, Dunham, Ian, Elnitski, Laura L., Farnham, Peggy J., Feingold, Elise A., Gerstein, Mark, Giddings, Morgan C., Gilbert, David M., Gingeras, Thomas R., Green, Eric D., Guigo, Roderic, Hubbard, Tim, Kent, Jim, Lieb, Jason D., Myerst, Richard M., Pazin, Michael J., Ren, Bing, Stamatoyannopoulos, John A., Weng, Zhiping, White, Kevin P., Hardison, Ross C.

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A map of cis-regulatory elements and 3D genome structures in zebrafish von Yang, Hongbo, Luan, Yu, Liu, Tingting, Lee, Hyung Joo, Fang, Li, Wang, Yanli, Wang, Xiaotao, Zhang, Bo, Jin, Qiushi, Ang, Khai Chung, Xing, Xiaoyun, Wang, Juan, Xu, Jie, Song, Fan, Sriranga, Iyyanki, Khunsriraksakul, Chachrit, Salameh, Tarik, Li, Daofeng, Choudhary, Mayank N. K., Topczewski, Jacek, Wang, Kai, Gerhard, Glenn S., Hardison, Ross C., Wang, Ting, Cheng, Keith C., Yue, Feng

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Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element von Huang, Peng, Keller, Cheryl A, Giardine, Belinda, Grevet, Jeremy D, Davies, James O J, Hughes, Jim R, Kurita, Ryo, Nakamura, Yukio, Hardison, Ross C, Blobel, Gerd A

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Comparative genomics von Hardison, Ross C

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