Protein biomarkers and alternatively methylated cell-free DNA detect early stage pancreatic cancer von Ben-Ami, R, Wang, QL, Zhang, JM, Supplee, JG, Fahrmann, JF, Lehmann-Werman, R, Brais, LK, Nowak, J, Yuan, C, Loftus, M, Babic, A, Irajizad, E, Davidi, T, Zick, A, Hubert, A, Neiman, D, Piyanzin, S, Gal-Rosenberg, O, Horn, A, Shemer, R, Glaser, B, Boos, N, Jajoo, K, Lee, L, Clancy, TE, Rubinson, DA, Ng, K, Chabot, JA, Kastrinos, F, Kluger, M, Aguirre, AJ, Jaenne, PA, Bardeesy, N, Stanger, B, O'Hara, MH, Till, J, Maitra, A, Carpenter, EL, Bullock, AJ, Genkinger, J, Hanash, SM, Paweletz, CP, Dor, Y, Wolpin, BM

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Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study von Hanash, Samir M, States, David J, Omenn, Gilbert S, Blackwell, Thomas W, Fermin, Damian, Eng, Jimmy, Speicher, David W

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Global Profiling of the Cell Surface Proteome of Cancer Cells Uncovers an Abundance of Proteins with Chaperone Function von Shin, Bong Kyung, Wang, Hong, Yim, Anne Marie, Le Naour, Francois, Brichory, Franck, Jang, Jun Ho, Zhao, Rong, Puravs, Eric, Tra, John, Michael, Claire W, Misek, David E, Hanash, Samir M

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Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 prot... von Omenn, Gilbert S., States, David J., Adamski, Marcin, Blackwell, Thomas W., Menon, Rajasree, Hermjakob, Henning, Apweiler, Rolf, Haab, Brian B., Simpson, Richard J., Eddes, James S., Kapp, Eugene A., Moritz, Robert L., Chan, Daniel W., Rai, Alex J., Admon, Arie, Aebersold, Ruedi, Eng, Jimmy, Hancock, William S., Hefta, Stanley A., Meyer, Helmut, Paik, Young-Ki, Yoo, Jong-Shin, Ping, Peipei, Pounds, Joel, Adkins, Joshua, Qian, Xiaohong, Wang, Rong, Wasinger, Valerie, Wu, Chi Yue, Zhao, Xiaohang, Zeng, Rong, Archakov, Alexander, Tsugita, Akira, Beer, Ilan, Pandey, Akhilesh, Pisano, Michael, Andrews, Philip, Tammen, Harald, Speicher, David W., Hanash, Samir M.

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Discordant Protein and mRNA Expression in Lung Adenocarcinomas von Chen, Guoan, Gharib, Tarek G, Huang, Chiang-Ching, Taylor, Jeremy M G, Misek, David E, Kardia, Sharon L R, Giordano, Thomas J, Iannettoni, Mark D, Orringer, Mark B, Hanash, Samir M, Beer, David G

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Characterization of Gene Expression Profiles Associated with Glioma Progression Using Oligonucleotide-Based Microarray Analysis and Real-Time Reverse Transcription-Polymerase Chain... von van den Boom, Jörg, Wolter, Marietta, Kuick, Rork, Misek, David E., Youkilis, Andrew S., Wechsler, Daniel S., Sommer, Clemens, Reifenberger, Guido, Hanash, Samir M.

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Proteomics-based Identification of RS/DJ-1 as a Novel Circulating Tumor Antigen in Breast Cancer von Le Naour, F, Misek, D E, Krause, M C, Deneux, L, Giordano, T J, Scholl, S, Hanash, S M

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Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis von RICKMAN, David S, BOBEK, Miroslav P, MISEK, David E, KUICK, Rork, BLAIVAS, Mila, KURNIT, David M, TAYLOR, Jeremy, HANASH, Samir M

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Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis von Gao, Wei-Min, Kuick, Rork, Orchekowski, Randal P, Misek, David E, Qiu, Ji, Greenberg, Alissa K, Rom, William N, Brenner, Dean E, Omenn, Gilbert S, Haab, Brian B, Hanash, Samir M

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Distinct Transcriptional Profiles of Adrenocortical Tumors Uncovered by DNA Microarray Analysis von Giordano, Thomas J., Thomas, Dafydd G., Kuick, Rork, Lizyness, Michelle, Misek, David E., Smith, Angela L., Sanders, Donita, Aljundi, Rima T., Gauger, Paul G., Thompson, Norman W., Taylor, Jeremy M.G., Hanash, Samir M.

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Protein Profiles Associated with Survival in Lung Adenocarcinoma von Chen, Guoan, Gharib, Tarek G., Wang, Hong, Huang, Chiang-Ching, Kuick, Rork, Thomas, Dafydd G., Shedden, Kerby A., Misek, David E., Jeremy M. G. Taylor, Giordano, Thomas J., Sharon L. R. Kardia, Iannettoni, Mark D., Yee, John, Hogg, Philip J., Orringer, Mark B., Hanash, Samir M., Beer, David G.

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Gene expression in ovarian cancer reflects both morphology and biological behavior, distinguishing clear cell from other poor-prognosis ovarian carcinomas von SCHWARTZ, Donald R, KARDIA, Sharon L. R, REED, Heather, ELLENSON, Lora H, GIORDANO, Thomas J, FEARON, Eric R, HANASH, Samir M, CHO, Kathleen R, SHEDDEN, Kerby A, KUICK, Rork, MICHAILIDIS, George, TAYLOR, Jeremy M. G, MISEK, David E, RONG WU, YALI ZHAI, DARRAH, Danielle M

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Microarray Analyses during Adipogenesis: Understanding the Effects of Wnt Signaling on Adipogenesis and the Roles of Liver X Receptor α in Adipocyte Metabolism von Ross, Sarah E., Erickson, Robin L., Gerin, Isabelle, DeRose, Paul M., Bajnok, Laszlo, Longo, Kenneth A., Misek, David E., Kuick, Rork, Hanash, Samir M., Atkins, Kevin B., Andresen, Sissel M., Nebb, Hilde I., Madsen, Lise, Kristiansen, Karsten, MacDougald, Ormond A.

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An Immune Response Manifested by the Common Occurrence of Annexins I and II Autoantibodies and High Circulating Levels of IL-6 in Lung Cancer von Brichory, Franck M., Misek, David E., Yim, Anne-Marie, Krause, Melissa C., Giordano, Thomas J., Beer, David G., Hanash, Samir M.

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Proteomic analysis of lung adenocarcinoma: Identification of a highly expressed set of proteins in tumors von GUOAN CHEN, GHARIB, Tarek G, ORRINGER, Mark B, HANASH, Samir M, BEER, David G, HUANG, Chiang-Ching, THOMAS, Dafydd G, SHEDDEN, Kerby A, TAYLOR, Jeremy M. G, KARDIA, Sharon L. R, MISEK, David E, GIORDANO, Thomas J, IANNETTONI, Mark D

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The major CD9 and CD81 molecular partner. Identification and characterization of the complexes von Charrin, S, Le Naour, F, Oualid, M, Billard, M, Faure, G, Hanash, S M, Boucheix, C, Rubinstein, E

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Intact-protein-based High-resolution Three-dimensional Quantitative Analysis System for Proteome Profiling of Biological Fluids von Wang, Hong, Clouthier, Shawn G, Galchev, Vladimir, Misek, David E, Duffner, Ulrich, Min, Chang-Ki, Zhao, Rong, Tra, John, Omenn, Gilbert S, Ferrara, James L M, Hanash, Samir M

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A Distinct Repertoire of Autoantibodies in Hepatocellular Carcinoma Identified by Proteomic Analysis von Le Naour, François, Brichory, Franck, Misek, David E, Bréchot, Christian, Hanash, Samir M, Beretta, Laura

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Isoelectric Focusing Nonporous RP HPLC:  A Two-Dimensional Liquid-Phase Separation Method for Mapping of Cellular Proteins with Identification Using MALDI-TOF Mass Spectrometry von Wall, Daniel B, Kachman, Maureen T, Gong, Siyuan, Hinderer, Robert, Parus, Steven, Misek, David E, Hanash, Samir M, Lubman, David M

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The bioenergetic signature of lung adenocarcinomas is a molecular marker of cancer diagnosis and prognosis von Cuezva, José M., Chen, Guoan, Alonso, Andrés M., Isidoro, Antonio, Misek, David E., Hanash, Samir M., Beer, David G.

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