GOBO: gene expression-based outcome for breast cancer online von Ringnér, Markus, Fredlund, Erik, Häkkinen, Jari, Borg, Åke, Staaf, Johan

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Comprehensive molecular comparison of BRCA1 hypermethylated and BRCA1 mutated triple negative breast cancers von Glodzik, Dominik, Bosch, Ana, Hartman, Johan, Aine, Mattias, Vallon-Christersson, Johan, Reuterswärd, Christel, Karlsson, Anna, Mitra, Shamik, Niméus, Emma, Holm, Karolina, Häkkinen, Jari, Hegardt, Cecilia, Saal, Lao H., Larsson, Christer, Malmberg, Martin, Rydén, Lisa, Ehinger, Anna, Loman, Niklas, Kvist, Anders, Ehrencrona, Hans, Nik-Zainal, Serena, Borg, Åke, Staaf, Johan

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Fast and sensitive validation of fusion transcripts in whole-genome sequencing data von Hafstað, Völundur, Häkkinen, Jari, Persson, Helena

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Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study von Staaf, Johan, Glodzik, Dominik, Bosch, Ana, Vallon-Christersson, Johan, Reuterswärd, Christel, Häkkinen, Jari, Degasperi, Andrea, Amarante, Tauanne Dias, Saal, Lao H., Hegardt, Cecilia, Stobart, Hilary, Ehinger, Anna, Larsson, Christer, Rydén, Lisa, Loman, Niklas, Malmberg, Martin, Kvist, Anders, Ehrencrona, Hans, Davies, Helen R., Borg, Åke, Nik-Zainal, Serena

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Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling von Roswall, Pernilla, Bocci, Matteo, Bartoschek, Michael, Li, Hong, Kristiansen, Glen, Jansson, Sara, Lehn, Sophie, Sjölund, Jonas, Reid, Steven, Larsson, Christer, Eriksson, Pontus, Anderberg, Charlotte, Cortez, Eliane, Saal, Lao H, Orsmark-Pietras, Christina, Cordero, Eugenia, Haller, Bengt Kristian, Häkkinen, Jari, Burvenich, Ingrid J G, Lim, Elgene, Orimo, Akira, Höglund, Mattias, Rydén, Lisa, Moch, Holger, Scott, Andrew M, Eriksson, Ulf, Pietras, Kristian

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Molecular analyses of triple-negative breast cancer in the young and elderly von Aine, Mattias, Boyaci, Ceren, Hartman, Johan, Hakkinen, Jari, Mitra, Shamik, Campos, Ana Bosch, Nimeus, Emma, Ehinger, Anna, Vallon-Christersson, Johan, Borg, Ake, Staaf, Johan

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Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification von Hafstað, Völundur, Häkkinen, Jari, Larsson, Malin, Staaf, Johan, Vallon-Christersson, Johan, Persson, Helena

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The X-Linked DDX3X RNA Helicase Dictates Translation Reprogramming and Metastasis in Melanoma von Phung, Bengt, Cieśla, Maciej, Sanna, Adriana, Guzzi, Nicola, Beneventi, Giulia, Cao Thi Ngoc, Phuong, Lauss, Martin, Cabrita, Rita, Cordero, Eugenia, Bosch, Ana, Rosengren, Frida, Häkkinen, Jari, Griewank, Klaus, Paschen, Annette, Harbst, Katja, Olsson, Håkan, Ingvar, Christian, Carneiro, Ana, Tsao, Hensin, Schadendorf, Dirk, Pietras, Kristian, Bellodi, Cristian, Jönsson, Göran

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The Proteios Software Environment: An Extensible Multiuser Platform for Management and Analysis of Proteomics Data von Häkkinen, Jari, Vincic, Gregory, Månsson, Olle, Wårell, Kristofer, Levander, Fredrik

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Frequent miRNA-convergent fusion gene events in breast cancer von Persson, Helena, Søkilde, Rolf, Häkkinen, Jari, Pirona, Anna Chiara, Vallon-Christersson, Johan, Kvist, Anders, Mertens, Fredrik, Borg, Åke, Mitelman, Felix, Höglund, Mattias, Rovira, Carlos

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Regulatory networks and 5′ partner usage of miRNA host gene fusions in breast cancer von Hafstað, Völundur, Søkilde, Rolf, Häkkinen, Jari, Larsson, Malin, Vallon‐Christersson, Johan, Rovira, Carlos, Persson, Helena

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Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome... von Brueffer, Christian, Vallon-Christersson, Johan, Grabau, Dorthe, Ehinger, Anna, Häkkinen, Jari, Hegardt, Cecilia, Malina, Janne, Chen, Yilun, Bendahl, Pär-Ola, Manjer, Jonas, Malmberg, Martin, Larsson, Christer, Loman, Niklas, Rydén, Lisa, Borg, Åke, Saal, Lao H.

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Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series von Vallon-Christersson, Johan, Häkkinen, Jari, Hegardt, Cecilia, Saal, Lao H., Larsson, Christer, Ehinger, Anna, Lindman, Henrik, Olofsson, Helena, Sjöblom, Tobias, Wärnberg, Fredrik, Ryden, Lisa, Loman, Niklas, Malmberg, Martin, Borg, Åke, Staaf, Johan

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Prediction of Lymph Node Metastasis in Breast Cancer by Gene Expression and Clinicopathological Models: Development and Validation within a Population-Based Cohort von Dihge, Looket, Vallon-Christersson, Johan, Hegardt, Cecilia, Saal, Lao H, Häkkinen, Jari, Larsson, Christer, Ehinger, Anna, Loman, Niklas, Malmberg, Martin, Bendahl, Pär-Ola, Borg, Åke, Staaf, Johan, Rydén, Lisa

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The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinica... von Saal, Lao H, Vallon-Christersson, Johan, Häkkinen, Jari, Hegardt, Cecilia, Grabau, Dorthe, Winter, Christof, Brueffer, Christian, Tang, Man-Hung Eric, Reuterswärd, Christel, Schulz, Ralph, Karlsson, Anna, Ehinger, Anna, Malina, Janne, Manjer, Jonas, Malmberg, Martin, Larsson, Christer, Rydén, Lisa, Loman, Niklas, Borg, Åke

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Analysis of fusion transcripts indicates widespread deregulation of snoRNAs and their host genes in breast cancer von Persson, Helena, Søkilde, Rolf, Häkkinen, Jari, Vallon‐Christersson, Johan, Mitelman, Felix, Borg, Åke, Höglund, Mattias, Rovira, Carlos

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Molecular and genetic diversity in the metastatic process of melanoma von Harbst, Katja, Lauss, Martin, Cirenajwis, Helena, Winter, Christof, Howlin, Jillian, Törngren, Therese, Kvist, Anders, Nodin, Björn, Olsson, Eleonor, Häkkinen, Jari, Jirström, Karin, Staaf, Johan, Lundgren, Lotta, Olsson, Håkan, Ingvar, Christian, Gruvberger-Saal, Sofia K, Saal, Lao H, Jönsson, Göran

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Agreement between molecular subtyping and surrogate subtype classification: a contemporary population-based study of ER-positive/HER2-negative primary breast cancer von Lundgren, Christine, Bendahl, Pär-Ola, Borg, Åke, Ehinger, Anna, Hegardt, Cecilia, Larsson, Christer, Loman, Niklas, Malmberg, Martin, Olofsson, Helena, Saal, Lao H., Sjöblom, Tobias, Lindman, Henrik, Klintman, Marie, Häkkinen, Jari, Vallon-Christersson, Johan, Fernö, Mårten, Rydén, Lisa, Ekholm, Maria

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Tumor genetic heterogeneity analysis of chronic sun‐damaged melanoma von Sanna, Adriana, Harbst, Katja, Johansson, Iva, Christensen, Gustav, Lauss, Martin, Mitra, Shamik, Rosengren, Frida, Häkkinen, Jari, Vallon‐Christersson, Johan, Olsson, Håkan, Ingvar, Åsa, Isaksson, Karolin, Ingvar, Christian, Nielsen, Kari, Jönsson, Göran

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RNA sequencing-based single sample predictors of molecular subtype and risk of recurrence for clinical assessment of early-stage breast cancer von Staaf, Johan, Häkkinen, Jari, Hegardt, Cecilia, Saal, Lao H., Kimbung, Siker, Hedenfalk, Ingrid, Lien, Tonje, Sørlie, Therese, Naume, Bjørn, Russnes, Hege, Marcone, Rachel, Ayyanan, Ayyakkannu, Brisken, Cathrin, Malterling, Rebecka R., Asking, Bengt, Olofsson, Helena, Lindman, Henrik, Bendahl, Pär-Ola, Ehinger, Anna, Larsson, Christer, Loman, Niklas, Rydén, Lisa, Malmberg, Martin, Borg, Åke, Vallon-Christersson, Johan

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