Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics von Marsh, Jacob I., Hu, Haifei, Gill, Mitchell, Batley, Jacqueline, Edwards, David

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The role of pangenomics in orphan crop improvement von Hu, Haifei, Zhao, Junliang, Thomas, William J. W., Batley, Jacqueline, Edwards, David

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A pangenome analysis pipeline provides insights into functional gene identification in rice von Wang, Jian, Yang, Wu, Zhang, Shaohong, Hu, Haifei, Yuan, Yuxuan, Dong, Jingfang, Chen, Luo, Ma, Yamei, Yang, Tifeng, Zhou, Lian, Chen, Jiansong, Liu, Bin, Li, Chengdao, Edwards, David, Zhao, Junliang

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Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003 von Marsh, Jacob I., Hu, Haifei, Petereit, Jakob, Bayer, Philipp E., Valliyodan, Babu, Batley, Jacqueline, Nguyen, Henry T., Edwards, David

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Advances in Integrating Genomics and Bioinformatics in the Plant Breeding Pipeline von Hu, Haifei, Scheben, Armin, Edwards, David

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Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction von Gill, Mitchell, Anderson, Robyn, Hu, Haifei, Bennamoun, Mohammed, Petereit, Jakob, Valliyodan, Babu, Nguyen, Henry T, Batley, Jacqueline, Bayer, Philipp E, Edwards, David

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Comparative gene retention analysis in barley, wild emmer, and bread wheat pangenome lines reveals factors affecting gene retention following gene duplication von Jia, Yong, Xu, Mingrui, Hu, Haifei, Chapman, Brett, Watt, Calum, Buerte, B, Han, Ning, Zhu, Muyuan, Bian, Hongwu, Li, Chengdao, Zeng, Zhanghui

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Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding von Bayer, Philipp E., Valliyodan, Babu, Hu, Haifei, Marsh, Jacob I., Yuan, Yuxuan, Vuong, Tri D., Patil, Gunvant, Song, Qijian, Batley, Jacqueline, Varshney, Rajeev K., Lam, Hon‐Ming, Edwards, David, Nguyen, Henry T.

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Hetero-bonding strength investigation into opto-mechanical interface von Hu, Haifei, Zhou, Di, Zhao, Chenchen, Qi, Erhui, Luo, Xiao

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Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes von Bayer, Philipp E., Petereit, Jakob, Durant, Éloi, Monat, Cécile, Rouard, Mathieu, Hu, Haifei, Chapman, Brett, Li, Chengdao, Cheng, Shifeng, Batley, Jacqueline, Edwards, David

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High-quality genome assembly and comparative genomic profiling of yellowhorn ( Xanthoceras sorbifolia ) revealed environmental adaptation footprints and seed oil contents variation... von Wang, Juan, Hu, Haifei, Liang, Xizhen, Tahir Ul Qamar, Muhammad, Zhang, Yunxiang, Zhao, Jianguo, Ren, Hongqian, Yan, Xingrong, Ding, Baopeng, Guo, Jinping

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High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data von Pan, Rui, Hu, Haifei, Xiao, Yuhui, Xu, Le, Xu, Yanhao, Ouyang, Kai, Li, Chengdao, He, Tianhua, Zhang, Wenying

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Plant pangenomics, current practice and future direction von Hu, Haifei, Wang, Jian, Nie, Shuai, Zhao, Junliang, Batley, Jacqueline, Edwards, David

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GWAS and Transcriptomic Analysis Identify OsRING315 as a New Candidate Gene Controlling Amylose Content and Gel Consistency in Rice von Nie, Shuai, Chen, Luo, Zheng, Minhua, Dong, Jingfang, Ma, Yamei, Zhou, Lian, Wang, Jian, Chen, Jiansong, Hu, Haifei, Yang, Tifeng, Zhao, Junliang, Zhang, Shaohong, Yang, Wu

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The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and Plant Height in Rice (Oryza sativa L.) von Dong, Jingfang, Ma, Yamei, Hu, Haifei, Wang, Jian, Yang, Wu, Fu, Hua, Zhang, Longting, Chen, Jiansong, Zhou, Lian, Li, Wenhui, Nie, Shuai, Liu, Ziqiang, Zhao, Junliang, Liu, Bin, Yang, Tifeng, Zhang, Shaohong

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Relay optical function and pre-construction results of a Giant Steerable Science Mirror for a thirty meter telescope von Fei, Yang, Xuejun, Zhang, Hongchao, Zhao, Qichang, An, Peng, Guo, Haibo, Jiang, Haifeng, Cao, Pengfei, Guo, Xiao, Luo, Erhui, Qi, Haifei, Hu, Haixiang, Hu, Jing, Zhang, Chylek, Tomas, Cole, Glen, Cho, Myung, Smith, Byron, Campbell, Marvin

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Pangenome-Wide Association Study and Transcriptome Analysis Reveal a Novel QTL and Candidate Genes Controlling both Panicle and Leaf Blast Resistance in Rice von Wang, Jian, Hu, Haifei, Jiang, Xianya, Zhang, Shaohong, Yang, Wu, Dong, Jingfang, Yang, Tifeng, Ma, Yamei, Zhou, Lian, Chen, Jiansong, Nie, Shuai, Liu, Chuanguang, Ning, Yuese, Zhu, Xiaoyuan, Liu, Bin, Yang, Jianyuan, Zhao, Junliang

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A Novel Function of GW5 on Controlling the Early Growth Vigor and its Haplotype Effect on Shoot Dry Weight and Grain Size in Rice (Oryza sativa L.) von Yang, Tifeng, Dong, Jingfang, Xiong, Xijuan, Zhang, Longting, Wang, Jian, Hu, Haifei, Zhou, Lian, Yang, Wu, Ma, Yamei, Fu, Hua, Chen, Jiansong, Li, Wenhui, Nie, Shuai, Liu, Ziqiang, Liu, Bin, Wang, Feng, Zhao, Junliang, Zhang, Shaohong

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Duck pan‐genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution von Wang, Kejun, Hua, Guoying, Li, Jingyi, Yang, Yu, Zhang, Chenxi, Yang, Lan, Hu, Xiaoyu, Scheben, Armin, Wu, Yanan, Gong, Ping, Zhang, Shuangjie, Fan, Yanfeng, Zeng, Tao, Lu, Lizhi, Gong, Yanzhang, Jiang, Ruirui, Sun, Guirong, Tian, Yadong, Kang, Xiangtao, Hu, Haifei, Li, Wenting

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Mapping of partial resistance to Phytophthora sojae in soybean PIs using whole‐genome sequencing reveals a major QTL von de Ronne, Maxime, Santhanam, Parthasarathy, Cinget, Benjamin, Labbé, Caroline, Lebreton, Amandine, Ye, Heng, Vuong, Tri D., Hu, Haifei, Valliyodan, Babu, Edwards, David, Nguyen, Henry T., Belzile, François, Bélanger, Richard

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