Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis von Davila, Jaime I, Arrieta-Montiel, Maria P, Wamboldt, Yashitola, Cao, Jun, Hagmann, Joerg, Shedge, Vikas, Xu, Ying-Zhi, Weigel, Detlef, Mackenzie, Sally A

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Spontaneous epigenetic variation in the Arabidopsis thaliana methylome von Becker, Claude, Hagmann, Jörg, Müller, Jonas, Koenig, Daniel, Stegle, Oliver, Borgwardt, Karsten, Weigel, Detlef

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Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization von Seymour, Danelle K, Koenig, Daniel, Hagmann, Jörg, Becker, Claude, Weigel, Detlef

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Simultaneous alignment of short reads against multiple genomes von Schneeberger, Korbinian, Hagmann, Jörg, Ossowski, Stephan, Warthmann, Norman, Gesing, Sandra, Kohlbacher, Oliver, Weigel, Detlef

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Fast-Forward Genetics Identifies Plant CPL Phosphatases as Regulators of miRNA Processing Factor HYL1 von Manavella, Pablo A., Hagmann, Jörg, Ott, Felix, Laubinger, Sascha, Franz, Mirita, Macek, Boris, Weigel, Detlef

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Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage von Hagmann, Jörg, Becker, Claude, Müller, Jonas, Stegle, Oliver, Meyer, Rhonda C, Wang, George, Schneeberger, Korbinian, Fitz, Joffrey, Altmann, Thomas, Bergelson, Joy, Borgwardt, Karsten, Weigel, Detlef

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Impaired KIN10 function restores developmental defects in the Arabidopsis trehalose 6‐phosphate synthase1 (tps1) mutant von Zacharaki, Vasiliki, Ponnu, Jathish, Crepin, Nathalie, Langenecker, Tobias, Hagmann, Jörg, Skorzinski, Noemi, Musialak‐Lange, Magdalena, Wahl, Vanessa, Rolland, Filip, Schmid, Markus

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The rate and potential relevance of new mutations in a colonizing plant lineage von Exposito-Alonso, Moises, Becker, Claude, Schuenemann, Verena J, Reiter, Ella, Setzer, Claudia, Slovak, Radka, Brachi, Benjamin, Hagmann, Jörg, Grimm, Dominik G, Chen, Jiahui, Busch, Wolfgang, Bergelson, Joy, Ness, Rob W, Krause, Johannes, Burbano, Hernán A, Weigel, Detlef

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Long-term balancing selection drives evolution of immunity genes in Capsella von Koenig, Daniel, Hagmann, Jörg, Li, Rachel, Bemm, Felix, Slotte, Tanja, Neuffer, Barbara, Wright, Stephen I, Weigel, Detlef

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Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M von Lutz, Ulrich, Posé, David, Pfeifer, Matthias, Gundlach, Heidrun, Hagmann, Jörg, Wang, Congmao, Weigel, Detlef, Mayer, Klaus F X, Schmid, Markus, Schwechheimer, Claus

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Assessing Distribution and Variation of Genome-Wide DNA Methylation Using Short-Read Sequencing von Hagmann, Jörg, Becker, Claude

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FYVE1 Is Essential for Vacuole Biogenesis and Intracellular Trafficking in Arabidopsis von Kolb, Cornelia, Nagel, Marie-Kristin, Kalinowska, Kamila, Hagmann, Jörg, Ichikawa, Mie, Anzenberger, Franziska, Alkofer, Angela, Sato, Masa H., Braun, Pascal, Isono, Erika

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RPW8/HR repeats control NLR activation in Arabidopsis thaliana von Barragan, Cristina A, Wu, Rui, Kim, Sang-Tae, Xi, Wanyan, Habring, Anette, Hagmann, Jörg, Van de Weyer, Anna-Lena, Zaidem, Maricris, Ho, William Wing Ho, Wang, George, Bezrukov, Ilja, Weigel, Detlef, Chae, Eunyoung

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KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1 von Karlsson, Patricia, Christie, Michael Danger, Seymour, Danelle K., Wang, Huan, Wang, Xi, Hagmann, Jörg, Kulcheski, Franceli, Manavella, Pablo Andrés

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Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella von Guo, Ya-Long, Todesco, Marco, Hagmann, Jörg, Das, Sandip, Weigel, Detlef

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Building pangenome graphs von Garrison, Erik, Guarracino, Andrea, Heumos, Simon, Villani, Flavia, Bao, Zhigui, Tattini, Lorenzo, Hagmann, Jörg, Vorbrugg, Sebastian, Marco-Sola, Santiago, Kubica, Christian, Ashbrook, David G., Thorell, Kaisa, Rusholme-Pilcher, Rachel L., Liti, Gianni, Rudbeck, Emilio, Golicz, Agnieszka A., Nahnsen, Sven, Yang, Zuyu, Mwaniki, Moses Njagi, Nobrega, Franklin L., Wu, Yi, Chen, Hao, de Ligt, Joep, Sudmant, Peter H., Huang, Sanwen, Weigel, Detlef, Soranzo, Nicole, Colonna, Vincenza, Williams, Robert W., Prins, Pjotr

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Accurate indel prediction using paired-end short reads von Grimm, Dominik, Hagmann, Jörg, Koenig, Daniel, Weigel, Detlef, Borgwardt, Karsten

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A Role for the F-Box Protein HAWAIIAN SKIRT in Plant microRNA Function von Lang, Patricia L. M., Christie, Michael D., Dogan, Ezgi S., Schwab, Rebecca, Hagmann, Jörg, van de Weyer, Anna-Lena, Scacchi, Emanuele, Weigel, Detlef

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Trowel: a fast and accurate error correction module for Illumina sequencing reads von Lim, Eun-Cheon, Müller, Jonas, Hagmann, Jörg, Henz, Stefan R, Kim, Sang-Tae, Weigel, Detlef

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On the Origin of De Novo Genes in Arabidopsis thaliana Populations von Li, Zi-Wen, Chen, Xi, Wu, Qiong, Hagmann, Jörg, Han, Ting-Shen, Zou, Yu-Pan, Ge, Song, Guo, Ya-Long

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