SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis von Muhar, Matthias, Ebert, Anja, Neumann, Tobias, Umkehrer, Christian, Jude, Julian, Wieshofer, Corinna, Rescheneder, Philipp, Lipp, Jesse J, Herzog, Veronika A, Reichholf, Brian, Cisneros, David A, Hoffmann, Thomas, Schlapansky, Moritz F, Bhat, Pooja, von Haeseler, Arndt, Köcher, Thomas, Obenauf, Anna C, Popow, Johannes, Ameres, Stefan L, Zuber, Johannes

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Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants von Sims, Jason, Sestini, Giovanni, Elgert, Christiane, von Haeseler, Arndt, Schlögelhofer, Peter

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TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics von Jobb, Gangolf, von Haeseler, Arndt, Strimmer, Korbinian

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A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato von Prakash, Celine, Trognitz, Friederike Ch, Venhuizen, Peter, von Haeseler, Arndt, Trognitz, Bodo

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The genomic basis of circadian and circalunar timing adaptations in a midge von Kaiser, Tobias S., Poehn, Birgit, Szkiba, David, Preussner, Marco, Sedlazeck, Fritz J., Zrim, Alexander, Neumann, Tobias, Nguyen, Lam-Tung, Betancourt, Andrea J., Hummel, Thomas, Vogel, Heiko, Dorner, Silke, Heyd, Florian, von Haeseler, Arndt, Tessmar-Raible, Kristin

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Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices von Chernomor, Olga, Von Haeseler, Arndt, Minh, Bui Quang

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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis von Trifinopoulos, Jana, Nguyen, Lam-Tung, von Haeseler, Arndt, Minh, Bui Quang

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UFBoot2: Improving the Ultrafast Bootstrap Approximation von Hoang, Diep Thi, Chernomor, Olga, von Haeseler, Arndt, Minh, Bui Quang, Vinh, Le Sy

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Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects von Dell'Ampio, Emiliano, Meusemann, Karen, Szucsich, Nikolaus U, Peters, Ralph S, Meyer, Benjamin, Borner, Janus, Petersen, Malte, Aberer, Andre J, Stamatakis, Alexandros, Walzl, Manfred G, Minh, Bui Quang, von Haeseler, Arndt, Ebersberger, Ingo, Pass, Günther, Misof, Bernhard

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Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase von Schenk, Sven, Bannister, Stephanie C, Sedlazeck, Fritz J, Anrather, Dorothea, Minh, Bui Quang, Bileck, Andrea, Hartl, Markus, von Haeseler, Arndt, Gerner, Christopher, Raible, Florian, Tessmar-Raible, Kristin

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Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance von Jagut, Marlène, Hamminger, Patricia, Woglar, Alexander, Millonigg, Sophia, Paulin, Luis, Mikl, Martin, Dello Stritto, Maria Rosaria, Tang, Lois, Habacher, Cornelia, Tam, Angela, Gallach, Miguel, von Haeseler, Arndt, Villeneuve, Anne M, Jantsch, Verena

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era von Minh, Bui Quang, Schmidt, Heiko A, Chernomor, Olga, Schrempf, Dominik, Woodhams, Michael D, von Haeseler, Arndt, Lanfear, Robert

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Likelihood-Mapping: A Simple Method to Visualize Phylogenetic Content of a Sequence Alignment von Strimmer, Korbinian, Von Haeseler, Arndt

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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies von Nguyen, Lam-Tung, Schmidt, Heiko A, von Haeseler, Arndt, Minh, Bui Quang

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NextGenMap: fast and accurate read mapping in highly polymorphic genomes von Sedlazeck, Fritz J, Rescheneder, Philipp, von Haeseler, Arndt

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Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life von KRAUSS, Ulrich, QUANG MINH, Bui, LOSI, Aba, GÄRTNER, Wolfgang, EGGERT, Thorsten, VON HAESELER, Arndt, JAEGER, Karl-Erich

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Accurate detection of complex structural variations using single-molecule sequencing von Sedlazeck, Fritz J., Rescheneder, Philipp, Smolka, Moritz, Fang, Han, Nattestad, Maria, von Haeseler, Arndt, Schatz, Michael C.

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Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes von Alves, Ricardo J. Eloy, Minh, Bui Quang, Urich, Tim, von Haeseler, Arndt, Schleper, Christa

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GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments von Crotty, Stephen M., Minh, Bui Quang, Bean, Nigel G., Holland, Barbara R., Tuke, Jonathan, Jermiin, Lars S., von Haeseler, Arndt

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Updating benchtop sequencing performance comparison von Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, Goesmann, Alexander, von Haeseler, Arndt, Stoye, Jens, Harmsen, Dag

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