Parallelism and convergence in post-domestication adaptation in cereal grasses von Woodhouse, M R, Hufford, M B

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Transgenes in Mexican maize: molecular evidence and methodological considerations for GMO detection in landrace populations von PIÑEYRO-NELSON, A., VAN HEERWAARDEN, J., PERALES, H. R., SERRATOS-HERNÁNDEZ, J. A., RANGEL, A., HUFFORD, M. B., GEPTS, P., GARAY-ARROYO, A., RIVERA-BUSTAMANTE, R., ÁLVAREZ-BUYLLA, E. R.

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Natural variation and improved genome annotation of the emerging biofuel crop field pennycress (Thlaspi arvense) von García Navarrete, Tatiana, Arias, Cintia, Mukundi, Eric, Alonso, Ana Paula, Grotewold, Erich

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Diversity and abundance of the abnormal chromosome 10 meiotic drive complex in Zea mays von Kanizay, L B, Pyhäjärvi, T, Lowry, E G, Hufford, M B, Peterson, D G, Ross-Ibarra, J, Dawe, R K

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Parallelism and convergence in post-domestication adaptation in cereal grasses von Woodhouse, M. R., Hufford, M. B.

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Controlling invasive species in complex social landscapes von Epanchin-Niell, Rebecca S, Hufford, Matthew B, Aslan, Clare E, Sexton, Jason P, Port, Jeffrey D, Waring, Timothy M

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Resolution of the Mexican transgene detection controversy: error sources and scientific practice in commercial and ecological contexts von PIÑEYRO-NELSON, A, VAN HEERWAARDEN, J, PERALES, H.R, SERRATOS-HERNÁNDEZ, J.A, RANGEL, A, HUFFORD, M.B, GEPTS, P, GARAY-ARROYO, A, RIVERA-BUSTAMANTE, R, ÁLVAREZ-BUYLLA, E.R

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The interplay of demography and selection during maize domestication and expansion von Wang, Li, Beissinger, Timothy M, Lorant, Anne, Ross-Ibarra, Claudia, Ross-Ibarra, Jeffrey, Hufford, Matthew B

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The extent of adaptive wild introgression in crops von Janzen, Garrett M., Wang, Li, Hufford, Matthew B.

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Comparative population genomics of maize domestication and improvement von Hufford, Matthew B, Xu, Xun, van Heerwaarden, Joost, Pyhäjärvi, Tanja, Chia, Jer-Ming, Cartwright, Reed A, Elshire, Robert J, Glaubitz, Jeffrey C, Guill, Kate E, Kaeppler, Shawn M, Lai, Jinsheng, Morrell, Peter L, Shannon, Laura M, Song, Chi, Springer, Nathan M, Swanson-Wagner, Ruth A, Tiffin, Peter, Wang, Jun, Zhang, Gengyun, Doebley, John, McMullen, Michael D, Ware, Doreen, Buckler, Edward S, Yang, Shuang, Ross-Ibarra, Jeffrey

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GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations von Manchanda, Nancy, Portwood, 2nd, John L, Woodhouse, Margaret R, Seetharam, Arun S, Lawrence-Dill, Carolyn J, Andorf, Carson M, Hufford, Matthew B

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Helminth infection reactivates latent γ-herpesvirus via cytokine competition at a viral promoter von Reese, T. A., Wakeman, B. S., Choi, H. S., Hufford, M. M., Huang, S. C., Zhang, X., Buck, M. D., Jezewski, A., Kambal, A., Liu, C. Y., Goel, G., Murray, P. J., Xavier, R. J., Kaplan, M. H., Renne, R., Speck, S. H., Artyomov, M. N., Pearce, E. J., Virgin, H. W.

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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes von Hufford, Matthew B, Seetharam, Arun S, Woodhouse, Margaret R, Chougule, Kapeel M, Ou, Shujun, Liu, Jianing, Ricci, William A, Guo, Tingting, Olson, Andrew, Qiu, Yinjie, Della Coletta, Rafael, Tittes, Silas, Hudson, Asher I, Marand, Alexandre P, Wei, Sharon, Lu, Zhenyuan, Wang, Bo, Tello-Ruiz, Marcela K, Piri, Rebecca D, Wang, Na, Kim, Dong Won, Zeng, Yibing, O'Connor, Christine H, Li, Xianran, Gilbert, Amanda M, Baggs, Erin, Krasileva, Ksenia V, Portwood, 2nd, John L, Cannon, Ethalinda K S, Andorf, Carson M, Manchanda, Nancy, Snodgrass, Samantha J, Hufnagel, David E, Jiang, Qiuhan, Pedersen, Sarah, Syring, Michael L, Kudrna, David A, Llaca, Victor, Fengler, Kevin, Schmitz, Robert J, Ross-Ibarra, Jeffrey, Yu, Jianming, Gent, Jonathan I, Hirsch, Candice N, Ware, Doreen, Dawe, R Kelly

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Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces von Wang, Li, Josephs, Emily B, Lee, Kristin M, Roberts, Lucas M, Rellán-Álvarez, Rubén, Ross-Ibarra, Jeffrey, Hufford, Matthew B

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Effect of sequence depth and length in long-read assembly of the maize inbred NC358 von Ou, Shujun, Liu, Jianing, Chougule, Kapeel M., Fungtammasan, Arkarachai, Seetharam, Arun S., Stein, Joshua C., Llaca, Victor, Manchanda, Nancy, Gilbert, Amanda M., Wei, Sharon, Chin, Chen-Shan, Hufnagel, David E., Pedersen, Sarah, Snodgrass, Samantha J., Fengler, Kevin, Woodhouse, Margaret, Walenz, Brian P., Koren, Sergey, Phillippy, Adam M., Hannigan, Brett T., Dawe, R. Kelly, Hirsch, Candice N., Hufford, Matthew B., Ware, Doreen

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Reshaping of the maize transcriptome by domestication von Swanson-Wagner, Ruth, Briskine, Roman, Schaefer, Robert, Hufford, Matthew B, Ross-Ibarra, Jeffrey, Myers, Chad L, Tiffin, Peter, Springer, Nathan M

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Haplotype structure in commercial maize breeding programs in relation to key founder lines von Coffman, Stephanie M., Hufford, Matthew B., Andorf, Carson M., Lübberstedt, Thomas

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Maize HapMap2 identifies extant variation from a genome in flux von Chia, Jer-Ming, Song, Chi, Bradbury, Peter J, Costich, Denise, de Leon, Natalia, Doebley, John, Elshire, Robert J, Gaut, Brandon, Geller, Laura, Glaubitz, Jeffrey C, Gore, Michael, Guill, Kate E, Holland, Jim, Hufford, Matthew B, Lai, Jinsheng, Li, Meng, Liu, Xin, Lu, Yanli, McCombie, Richard, Nelson, Rebecca, Poland, Jesse, Prasanna, Boddupalli M, Pyhäjärvi, Tanja, Rong, Tingzhao, Sekhon, Rajandeep S, Sun, Qi, Tenaillon, Maud I, Tian, Feng, Wang, Jun, Xu, Xun, Zhang, Zhiwu, Kaeppler, Shawn M, Ross-Ibarra, Jeffrey, McMullen, Michael D, Buckler, Edward S, Zhang, Gengyun, Xu, Yunbi, Ware, Doreen

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Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize von Song, Baoxing, Buckler, Edward S, Wang, Hai, Wu, Yaoyao, Rees, Evan, Kellogg, Elizabeth A, Gates, Daniel J, Khaipho-Burch, Merritt, Bradbury, Peter J, Ross-Ibarra, Jeffrey, Hufford, Matthew B, Romay, M Cinta

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Allele-specific Expression Reveals Multiple Paths to Highland Adaptation in Maize von Hu, Haixiao, Crow, Taylor, Nojoomi, Saghi, Schulz, Aimee J, Estévez-Palmas, Juan M, Hufford, Matthew B, Flint-Garcia, Sherry, Sawers, Ruairidh, Rellán-Álvarez, Rubén, Ross-Ibarra, Jeffrey, Runcie, Daniel E

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