Automated analysis of phylogenetic clusters von Ragonnet-Cronin, Manon, Hodcroft, Emma, Hué, Stéphane, Fearnhill, Esther, Delpech, Valerie, Brown, Andrew J Leigh, Lycett, Samantha

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Drug resistance mutations in HIV: new bioinformatics approaches and challenges von Blassel, Luc, Zhukova, Anna, Villabona-Arenas, Christian J, Atkins, Katherine E, Hué, Stéphane, Gascuel, Olivier

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An Active TRIM5 Protein in Rabbits Indicates a Common Antiviral Ancestor for Mammalian TRIM5 Proteins von SCHALLER, Torsten, HUE, Stéphane, TOWERS, Greg J

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Human Immunodeficiency Virus Type 1 Phylodynamics to Detect and Characterize Active Transmission Clusters in North Carolina von Dennis, Ann M, Hué, Stéphane, Billock, Rachael, Levintow, Sara, Sebastian, Joseph, Miller, William C, Eron, Joseph J

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External Validation of an MRI-Derived Radiomics Model to Predict Biochemical Recurrence after Surgery for High-Risk Prostate Cancer von Bourbonne, Vincent, Fournier, Georges, Vallières, Martin, Lucia, François, Doucet, Laurent, Tissot, Valentin, Cuvelier, Gilles, Hue, Stephane, Le Penn Du, Henri, Perdriel, Luc, Bertrand, Nicolas, Staroz, Frederic, Visvikis, Dimitris, Pradier, Olivier, Hatt, Mathieu, Schick, Ulrike

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A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK von Mourad, Raphaël, Chevennet, François, Dunn, David T, Fearnhill, Esther, Delpech, Valerie, Asboe, David, Gascuel, Olivier, Hue, Stéphane

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Interactions between timing and transmissibility explain diverse flavivirus dynamics in Fiji von Henderson, Alasdair D., Kama, Mike, Aubry, Maite, Hue, Stephane, Teissier, Anita, Naivalu, Taina, Bechu, Vinaisi D., Kailawadoko, Jimaima, Rabukawaqa, Isireli, Sahukhan, Aalisha, Hibberd, Martin L., Nilles, Eric J., Funk, Sebastian, Whitworth, Jimmy, Watson, Conall H., Lau, Colleen L., Edmunds, W. John, Cao-Lormeau, Van-Mai, Kucharski, Adam J.

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Phenotypic properties of envelope glycoproteins of transmitted HIV-1 variants from patients belonging to transmission chains von Beretta, Maxime, Moreau, Alain, Bouvin-Pley, Mélanie, Essat, Asma, Goujard, Cécile, Chaix, Marie-Laure, Hue, Stéphane, Meyer, Laurence, Barin, Francis, Braibant, Martine

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Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs von Villabona-Arenas, Christian Julian, Hué, Stéphane, Baxter, James A. C., Hall, Matthew, Lythgoe, Katrina A., Bradley, John, Atkins, Katherine E.

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G2/M cell cycle arrest correlates with primate lentiviral Vpr interaction with the SLX4 complex von Berger, Gregory, Lawrence, Madeleine, Hué, Stephane, Neil, Stuart J D

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The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance von Gifford, Robert J., Liu, Tommy F., Rhee, Soo-Yon, Kiuchi, Mark, Hue, Stephane, Pillay, Deenan, Shafer, Robert W.

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Poxvirus genomes: a phylogenetic analysis von Gubser, Caroline, Hue, Stephane, Kellam, Paul, Smith, Geoffrey L

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Ross River Virus Antibody Prevalence, Fiji Islands, 2013-2015 von Aubry, Maite, Kama, Mike, Vanhomwegen, Jessica, Teissier, Anita, Mariteragi-Helle, Teheipuaura, Hue, Stephane, Hibberd, Martin L, Manuguerra, Jean-Claude, Christi, Ketan, Watson, Conall H, Nilles, Eric J, Lau, Colleen L, Aaskov, John, Musso, Didier, Kucharski, Adam J, Cao-Lormeau, Van-Mai

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Phylogenetic Analysis of Murine Leukemia Virus Sequences from Longitudinally Sampled Chronic Fatigue Syndrome Patients Suggests PCR Contamination Rather than Viral Evolution von KATZOURAKIS, Aris, HUE, Stéphane, KELLAM, Paul, TOWERS, Greg J

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HIV Transmission Patterns Among Immigrant Latinos Illuminated by the Integration of Phylogenetic and Migration Data von Dennis, Ann M, Hué, Stéphane, Pasquale, Dana, Napravnik, Sonia, Sebastian, Joseph, Miller, William C, Eron, Joseph J

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Phylogenetic and demographic characterization of HIV-1 transmission in Madrid, Spain von Yebra, Gonzalo, Holguín, África, Pillay, Deenan, Hué, Stéphane

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Positive Selection Analysis of Overlapping Reading Frames Is Invalid von Monit, Christopher, Goldstein, Richard A, Towers, Greg, Hué, Stéphane

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Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history von Zhu, Yuan O, Aw, Pauline P K, de Sessions, Paola Florez, Hong, Shuzhen, See, Lee Xian, Hong, Lewis Z, Wilm, Andreas, Li, Chen Hao, Hue, Stephane, Lim, Seng Gee, Nagarajan, Niranjan, Burkholder, William F, Hibberd, Martin

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Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals: e1003895 von Pickering, Suzanne, Hué, Stephane, Kim, Eun-Young, Reddy, Susheel, Wolinsky, Steven M, Neil, Stuart JD

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Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission von Dennis, Ann M., Hué, Stephane, Learner, Emily, Sebastian, Joseph, Miller, William C., Eron, Joseph J.

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