Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species von Donati, Claudio, Hiller, N Luisa, Tettelin, Hervé, Muzzi, Alessandro, Croucher, Nicholas J, Angiuoli, Samuel V, Oggioni, Marco, Dunning Hotopp, Julie C, Hu, Fen Z, Riley, David R, Covacci, Antonello, Mitchell, Tim J, Bentley, Stephen D, Kilian, Morgens, Ehrlich, Garth D, Rappuoli, Rino, Moxon, E Richard, Masignani, Vega

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Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection von Hiller, N Luisa, Ahmed, Azad, Powell, Evan, Martin, Darren P, Eutsey, Rory, Earl, Josh, Janto, Benjamin, Boissy, Robert J, Hogg, Justin, Barbadora, Karen, Sampath, Rangarajan, Lonergan, Shaun, Post, J Christopher, Hu, Fen Z, Ehrlich, Garth D

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Comparative Genomic Analyses of 17 Clinical Isolates of Gardnerella vaginalis Provide Evidence of Multiple Genetically Isolated Clades Consistent with Subspeciation into Genovars von Ahmed, Azad, Earl, Josh, Retchless, Adam, Hillier, Sharon L, Rabe, Lorna K, Cherpes, Thomas L, Powell, Evan, Janto, Benjamin, Eutsey, Rory, Hiller, N. Luisa, Boissy, Robert, Dahlgren, Margaret E, Hall, Barry G, Costerton, J. William, Post, J. Christopher, Hu, Fen Z, Ehrlich, Garth D

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Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains von Hogg, Justin S, Hu, Fen Z, Janto, Benjamin, Boissy, Robert, Hayes, Jay, Keefe, Randy, Post, J Christopher, Ehrlich, Garth D

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Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome von Hiller, N Luisa, Janto, Benjamin, Hogg, Justin S, Boissy, Robert, Yu, Susan, Powell, Evan, Keefe, Randy, Ehrlich, Nathan E, Shen, Kai, Hayes, Jay, Barbadora, Karen, Klimke, William, Dernovoy, Dmitry, Tatusova, Tatiana, Parkhill, Julian, Bentley, Stephen D, Post, J Christopher, Ehrlich, Garth D, Hu, Fen Z

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Deletion of genes involved in the ketogluconate metabolism, Entner-Doudoroff pathway, and glucose dehydrogenase increase local and invasive virulence phenotypes in Streptococcus pn... von Hu, Fen Z, Król, Jarosław E, Tsai, Chen Hsuan Sherry, Eutsey, Rory A, Hiller, Luisa N, Sen, Bhaswati, Ahmed, Azad, Hillman, Todd, Buchinsky, Farrel J, Nistico, Laura, Dice, Bethany, Longwell, Mark, Horsey, Edward, Ehrlich, Garth D

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Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae von Kress-Bennett, Jennifer M, Hiller, N Luisa, Eutsey, Rory A, Powell, Evan, Longwell, Mark J, Hillman, Todd, Blackwell, Tenisha, Byers, Barbara, Mell, Joshua C, Post, J Christopher, Hu, Fen Z, Ehrlich, Garth D, Janto, Benjamin A

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Insights into the genome of large sulfur bacteria revealed by analysis of single filaments von Mussmann, Marc, Hu, Fen Z, Richter, Michael, de Beer, Dirk, Preisler, André, Jørgensen, Bo B, Huntemann, Marcel, Glöckner, Frank Oliver, Amann, Rudolf, Koopman, Werner J H, Lasken, Roger S, Janto, Benjamin, Hogg, Justin, Stoodley, Paul, Boissy, Robert, Ehrlich, Garth D

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In vivo capsular switch in Streptococcus pneumoniae--analysis by whole genome sequencing von Hu, Fen Z, Eutsey, Rory, Ahmed, Azad, Frazao, Nelson, Powell, Evan, Hiller, N Luisa, Hillman, Todd, Buchinsky, Farrel J, Boissy, Robert, Janto, Benjamin, Kress-Bennett, Jennifer, Longwell, Mark, Ezzo, Suzanne, Post, J Christopher, Nesin, Mirjana, Tomasz, Alexander, Ehrlich, Garth D

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Comparative Genomic Analysis of Ten Streptococcus pneumoniae Temperate Bacteriophages von ROMERO, Patricia, CROUCHER, Nicholas J, LUISA HILLER, N, HU, Fen Z, EHRLICH, Garth D, BENTLEY, Stephen D, GARCIA, Ernesto, MITCHELL, Tim J

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Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome mod... von Boissy, Robert, Ahmed, Azad, Janto, Benjamin, Earl, Josh, Hall, Barry G, Hogg, Justin S, Pusch, Gordon D, Hiller, Luisa N, Powell, Evan, Hayes, Jay, Yu, Susan, Kathju, Sandeep, Stoodley, Paul, Post, J Christopher, Ehrlich, Garth D, Hu, Fen Z

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Characterization of Bacterial Communities in Venous Insufficiency Wounds by Use of Conventional Culture and Molecular Diagnostic Methods von TURTLE, Marie S, MOSTOW, Eliot, MUKHERJEE, Pranab, HU, Fen Z, MELTON-KREFT, Rachael, EHRLICH, Garth D, DOWD, Scot E, GHANNOUM, Mahmoud A

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Complete Genome Sequence of Streptococcus pneumoniae Strain ST556, a Multidrug-Resistant Isolate from an Otitis Media Patient von Li, Guiling, Hu, Fen Z, Yang, Xianwei, Cui, Yujun, Yang, Jun, Qu, Fen, Gao, George F, Zhang, Jing-Ren

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Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates von Davie, Jeremiah J, Earl, Josh, de Vries, Stefan P W, Ahmed, Azad, Hu, Fen Z, Bootsma, Hester J, Stol, Kim, Hermans, Peter W M, Wadowsky, Robert M, Ehrlich, Garth D, Hays, John P, Campagnari, Anthony A

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The microbiome of chronic rhinosinusitis: culture, molecular diagnostics and biofilm detection von Boase, Sam, Foreman, Andrew, Cleland, Edward, Tan, Lorwai, Melton-Kreft, Rachel, Pant, Harshita, Hu, Fen Z, Ehrlich, Garth D, Wormald, Peter-John

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Age of child, more than HPV type, is associated with clinical course in recurrent respiratory papillomatosis von Buchinsky, Farrel J, Donfack, Joseph, Derkay, Craig S, Choi, Sukgi S, Conley, Stephen F, Myer, 3rd, Charles M, McClay, John E, Campisi, Paolo, Wiatrak, Brian J, Sobol, Steven E, Schweinfurth, John M, Tsuji, Domingos H, Hu, Fen Z, Rockette, Howard E, Ehrlich, Garth D, Post, J Christopher

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Development and validation of an Haemophilus influenzae supragenome hybridization (SGH) array for transcriptomic analyses von Janto, Benjamin A, Hiller, N Luisa, Eutsey, Rory A, Dahlgren, Margaret E, Earl, Joshua P, Powell, Evan, Ahmed, Azad, Hu, Fen Z, Ehrlich, Garth D

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Nanoscale Structural and Mechanical Properties of Nontypeable Haemophilus influenzae Biofilms von TERAN ARCE, Fernando, CARLSON, Ross, MONDS, James, VEEH, Richard, HU, Fen Z, STEWART, Philip S, LAL, Ratnesh, EHRLICH, Garth D, AVCI, Recep

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Extensive Genomic Plasticity in Pseudomonas aeruginosa Revealed by Identification and Distribution Studies of Novel Genes among Clinical Isolates von Shen, Kai, Sayeed, Sameera, Antalis, Patricia, Gladitz, John, Ahmed, Azad, Dice, Bethany, Janto, Benjamin, Dopico, Richard, Keefe, Randy, Hayes, Jay, Johnson, Sandra, Yu, Sujun, Ehrlich, Nathan, Jocz, Jennifer, Kropp, Laura, Wong, Ray, Wadowsky, Robert M, Slifkin, Malcolm, Preston, Robert A, Erdos, Geza, Post, J. Christopher, Ehrlich, Garth D, Hu, Fen Z

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Meta-omic Characterization of the Marine Invertebrate Microbial Consortium That Produces the Chemotherapeutic Natural Product ET-743 von Rath, Christopher M, Janto, Benjamin, Earl, Josh, Ahmed, Azad, Hu, Fen Z, Hiller, Luisa, Dahlgren, Meg, Kreft, Rachael, Yu, Fengan, Wolff, Jeremy J, Kweon, Hye Kyong, Christiansen, Michael A, Håkansson, Kristina, Williams, Robert M, Ehrlich, Garth D, Sherman, David H

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