Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing von Fischer, Will, Ganusov, Vitaly V, Giorgi, Elena E, Hraber, Peter T, Keele, Brandon F, Leitner, Thomas, Han, Cliff S, Gleasner, Cheryl D, Green, Lance, Lo, Chien-Chi, Nag, Ambarish, Wallstrom, Timothy C, Wang, Shuyi, McMichael, Andrew J, Haynes, Barton F, Hahn, Beatrice H, Perelson, Alan S, Borrow, Persephone, Shaw, George M, Bhattacharya, Tanmoy, Korber, Bette T

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Completeness of HIV-1 Envelope Glycan Shield at Transmission Determines Neutralization Breadth von Wagh, Kshitij, Kreider, Edward F., Li, Yingying, Barbian, Hannah J., Learn, Gerald H., Giorgi, Elena, Hraber, Peter T., Decker, Timothy G., Smith, Andrew G., Gondim, Marcos V., Gillis, Lindsey, Wandzilak, Jamie, Chuang, Gwo-Yu, Rawi, Reda, Cai, Fangping, Pellegrino, Pierre, Williams, Ian, Overbaugh, Julie, Gao, Feng, Kwong, Peter D., Haynes, Barton F., Shaw, George M., Borrow, Persephone, Seaman, Michael S., Hahn, Beatrice H., Korber, Bette

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Role of donor genital tract HIV-1 diversity in the transmission bottleneck von Boeras, Debrah I, Hraber, Peter T, Hurlston, Mackenzie, Evans-Strickfaden, Tammy, Bhattacharya, Tanmoy, Giorgi, Elena E, Mulenga, Joseph, Karita, Etienne, Korber, Bette T, Allen, Susan, Hart, Clyde E, Derdeyn, Cynthia A, Hunter, Eric

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Advantage of rare HLA supertype in HIV disease progression von Trachtenberg, Elizabeth, Korber, Bette, Sollars, Cristina, Kepler, Thomas B, Hraber, Peter T, Hayes, Elizabeth, Funkhouser, Robert, Fugate, Michael, Theiler, James, Hsu, Yen S, Kunstman, Kevin, Wu, Samuel, Phair, John, Erlich, Henry, Wolinsky, Steven

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Zika viral dynamics and shedding in rhesus and cynomolgus macaques von Osuna, Christa E, Lim, So-Yon, Deleage, Claire, Griffin, Bryan D, Stein, Derek, Schroeder, Lukas T, Omange, Robert, Best, Katharine, Luo, Ma, Hraber, Peter T, Andersen-Elyard, Hanne, Ojeda, Erwing Fabian Cardozo, Huang, Scott, Vanlandingham, Dana L, Higgs, Stephen, Perelson, Alan S, Estes, Jacob D, Safronetz, David, Lewis, Mark G, Whitney, James B

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The TRIM5 Gene Modulates Penile Mucosal Acquisition of Simian Immunodeficiency Virus in Rhesus Monkeys von YEH, Wendy W, RAO, Srinivas S, BUZBY, Adam P, WHITNEY, James B, KORBER, Bette T, NABEL, Gary J, MASCOLA, John R, LETVIN, Norman L, LIM, So-Yon, JINRONG ZHANG, HRABER, Peter T, BRASSARD, Laura M, LUEDEMANN, Corinne, PAUL TODD, John, DODSON, Alan, LING SHEN

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Nucleoside-modified mRNA vaccines induce potent T follicular helper and germinal center B cell responses von Pardi, Norbert, Hogan, Michael J, Naradikian, Martin S, Parkhouse, Kaela, Cain, Derek W, Jones, Letitia, Moody, M Anthony, Verkerke, Hans P, Myles, Arpita, Willis, Elinor, LaBranche, Celia C, Montefiori, David C, Lobby, Jenna L, Saunders, Kevin O, Liao, Hua-Xin, Korber, Bette T, Sutherland, Laura L, Scearce, Richard M, Hraber, Peter T, Tombácz, István, Muramatsu, Hiromi, Ni, Houping, Balikov, Daniel A, Li, Charles, Mui, Barbara L, Tam, Ying K, Krammer, Florian, Karikó, Katalin, Polacino, Patricia, Eisenlohr, Laurence C, Madden, Thomas D, Hope, Michael J, Lewis, Mark G, Lee, Kelly K, Hu, Shiu-Lok, Hensley, Scott E, Cancro, Michael P, Haynes, Barton F, Weissman, Drew

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HIV-1 subtype C superinfected individuals mount low autologous neutralizing antibody responses prior to intrasubtype superinfection von Basu, Debby, Kraft, Colleen S, Murphy, Megan K, Campbell, Patricia J, Yu, Tianwei, Hraber, Peter T, Irene, Carmela, Pinter, Abraham, Chomba, Elwyn, Mulenga, Joseph, Kilembe, William, Allen, Susan A, Derdeyn, Cynthia A, Hunter, Eric

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Timing and source of subtype-C HIV-1 superinfection in the newly infected partner of Zambian couples with disparate viruses von Kraft, Colleen S, Basu, Debby, Hawkins, Paulina A, Hraber, Peter T, Chomba, Elwyn, Mulenga, Joseph, Kilembe, William, Khu, Naw H, Derdeyn, Cynthia A, Allen, Susan A, Manigart, Olivier, Hunter, Eric

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Recapitulation of HIV-1 Env-antibody coevolution in macaques leading to neutralization breadth von Roark, Ryan S, Li, Hui, Williams, Wilton B, Chug, Hema, Mason, Rosemarie D, Gorman, Jason, Wang, Shuyi, Lee, Fang-Hua, Rando, Juliette, Bonsignori, Mattia, Hwang, Kwan-Ki, Saunders, Kevin O, Wiehe, Kevin, Moody, M Anthony, Hraber, Peter T, Wagh, Kshitij, Giorgi, Elena E, Russell, Ronnie M, Bibollet-Ruche, Frederic, Liu, Weimin, Connell, Jesse, Smith, Andrew G, DeVoto, Julia, Murphy, Alexander I, Smith, Jessica, Ding, Wenge, Zhao, Chengyan, Chohan, Neha, Okumura, Maho, Rosario, Christina, Ding, Yu, Lindemuth, Emily, Bauer, Anya M, Bar, Katharine J, Ambrozak, David, Chao, Cara W, Chuang, Gwo-Yu, Geng, Hui, Lin, Bob C, Louder, Mark K, Nguyen, Richard, Zhang, Baoshan, Lewis, Mark G, Raymond, Donald D, Doria-Rose, Nicole A, Schramm, Chaim A, Douek, Daniel C, Roederer, Mario, Kepler, Thomas B, Kelsoe, Garnett, Mascola, John R, Kwong, Peter D, Korber, Bette T, Harrison, Stephen C, Haynes, Barton F, Hahn, Beatrice H, Shaw, George M

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Genital tract sequestration of SIV following acute infection von Whitney, James B, Hraber, Peter T, Luedemann, Corinne, Giorgi, Elena E, Daniels, Marcus G, Bhattacharya, Tanmoy, Rao, Srinivas S, Mascola, John R, Nabel, Gary J, Korber, Bette T, Letvin, Norman L

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Envelope Vaccination Shapes Viral Envelope Evolution following Simian Immunodeficiency Virus Infection in Rhesus Monkeys von Basavapathruni, Aravind, Yeh, Wendy W, Coffey, Rory T, Whitney, James B, Hraber, Peter T, Giri, Ayush, Korber, Bette T, Rao, Srinivas S, Nabel, Gary J, Mascola, John R, Seaman, Michael S, Letvin, Norman L

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Strain-Specific V3 and CD4 Binding Site Autologous HIV-1 Neutralizing Antibodies Select Neutralization-Resistant Viruses von Moody, M. Anthony, Gao, Feng, Gurley, Thaddeus C., Amos, Joshua D., Kumar, Amit, Hora, Bhavna, Marshall, Dawn J., Whitesides, John F., Xia, Shi-Mao, Parks, Robert, Lloyd, Krissey E., Hwang, Kwan-Ki, Lu, Xiaozhi, Bonsignori, Mattia, Finzi, Andrés, Vandergrift, Nathan A., Alam, S. Munir, Ferrari, Guido, Shen, Xiaoying, Tomaras, Georgia D., Kamanga, Gift, Cohen, Myron S., Sam, Noel E., Kapiga, Saidi, Gray, Elin S., Tumba, Nancy L., Morris, Lynn, Zolla-Pazner, Susan, Gorny, Miroslaw K., Mascola, John R., Hahn, Beatrice H., Shaw, George M., Sodroski, Joseph G., Liao, Hua-Xin, Montefiori, David C., Hraber, Peter T., Korber, Bette T., Haynes, Barton F.

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Comparative analysis of hepatitis C virus phylogenies from coding and non-coding regions: the 5' untranslated region (UTR) fails to classify subtypes von Hraber, Peter T, Fischer, William, Bruno, William J, Leitner, Thomas, Kuiken, Carla

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Corrigendum: Zika viral dynamics and shedding in rhesus and cynomolgus macaques von Osuna, Christa E, Lim, So-Yon, Deleage, Claire, Griffin, Bryan D, Stein, Derek, Schroeder, Lukas T, Omage, Robert, Best, Katharine, Luo, Ma, Hraber, Peter T, Andersen-Elyard, Hanne, Ojeda, Erwing Fabian Cardozo, Huang, Scott, Vanlandingham, Dana L, Higgs, Stephen, Perelson, Alan S, Estes, Jacob D, Safronetz, David, Lewis, Mark G, Whitney, James B

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Comparative Analysis of Expressed Sequences in Phytophthora sojae von Dinah Qutob, Hraber, Peter T., Bruno W. S. Sobral, Gijzen, Mark

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Evolving cellular automata to perform computations: mechanisms and impediments von Mitchell, Melanie, Crutchfield, James P., Hraber, Peter T.

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Estimating the contributions of selection and self-organization in RNA secondary structure von Schultes, E A, Hraber, P T, LaBean, T H

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Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody von Bonsignori, Mattia, Zhou, Tongqing, Sheng, Zizhang, Chen, Lei, Gao, Feng, Joyce, M. Gordon, Ozorowski, Gabriel, Chuang, Gwo-Yu, Schramm, Chaim A., Wiehe, Kevin, Alam, S. Munir, Bradley, Todd, Gladden, Morgan A., Hwang, Kwan-Ki, Iyengar, Sheelah, Kumar, Amit, Lu, Xiaozhi, Luo, Kan, Mangiapani, Michael C., Parks, Robert J., Song, Hongshuo, Acharya, Priyamvada, Bailer, Robert T., Cao, Allen, Druz, Aliaksandr, Georgiev, Ivelin S., Kwon, Young D., Louder, Mark K., Zhang, Baoshan, Zheng, Anqi, Hill, Brenna J., Kong, Rui, Soto, Cinque, Mullikin, James C., Douek, Daniel C., Montefiori, David C., Moody, Michael A., Shaw, George M., Hahn, Beatrice H., Kelsoe, Garnett, Hraber, Peter T., Korber, Bette T., Boyd, Scott D., Fire, Andrew Z., Kepler, Thomas B., Shapiro, Lawrence, Ward, Andrew B., Mascola, John R., Liao, Hua-Xin, Kwong, Peter D., Haynes, Barton F.

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On the species of origin: diagnosing the source of symbiotic transcripts von Hraber, Peter T, Weller, Jennifer W

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