Biopython: freely available Python tools for computational molecular biology and bioinformatics von Cock, Peter J. A., Antao, Tiago, Chang, Jeffrey T., Chapman, Brad A., Cox, Cymon J., Dalke, Andrew, Friedberg, Iddo, Hamelryck, Thomas, Kauff, Frank, Wilczynski, Bartek, de Hoon, Michiel J. L.

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Characteristics of triple-negative breast cancer von de Ruijter, Tim C, Veeck, Jürgen, de Hoon, Joep P. J, van Engeland, Manon, Tjan-Heijnen, Vivianne C

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Annotation of nuclear lncRNAs based on chromatin interactions von Agrawal, Saumya, Buyan, Andrey, Severin, Jessica, Koido, Masaru, Alam, Tanvir, Abugessaisa, Imad, Chang, Howard Y, Dostie, Josée, Itoh, Masayoshi, Kere, Juha, Kondo, Naoto, Li, Yunjing, Makeev, Vsevolod J, Mendez, Mickaël, Okazaki, Yasushi, Ramilowski, Jordan A, Sigorskikh, Andrey I, Strug, Lisa J, Yagi, Ken, Yasuzawa, Kayoko, Yip, Chi Wai, Hon, Chung Chau, Hoffman, Michael M, Terao, Chikashi, Kulakovskiy, Ivan V, Kasukawa, Takeya, Shin, Jay W, Carninci, Piero, de Hoon, Michiel J L

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Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation von Forrest, A R R, Kanamori-Katayama, M, Tomaru, Y, Lassmann, T, Ninomiya, N, Takahashi, Y, de Hoon, M J L, Kubosaki, A, Kaiho, A, Suzuki, M, Yasuda, J, Kawai, J, Hayashizaki, Y, Hume, D A, Suzuki, H

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LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C von Ducoli, Luca, Agrawal, Saumya, Sibler, Eliane, Kouno, Tsukasa, Tacconi, Carlotta, Hon, Chung-Chao, Berger, Simone D., Müllhaupt, Daniela, He, Yuliang, Kim, Jihye, D’Addio, Marco, Dieterich, Lothar C., Carninci, Piero, de Hoon, Michiel J. L., Shin, Jay W., Detmar, Michael

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Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection von Roy, Sugata, Guler, Reto, Parihar, Suraj P, Schmeier, Sebastian, Kaczkowski, Bogumil, Nishimura, Hajime, Shin, Jay W, Negishi, Yutaka, Ozturk, Mumin, Hurdayal, Ramona, Kubosaki, Atsutaka, Kimura, Yasumasa, de Hoon, Michiel J L, Hayashizaki, Yoshihide, Brombacher, Frank, Suzuki, Harukazu

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Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics von Roy, Sugata, Schmeier, Sebastian, Arner, Erik, Alam, Tanvir, Parihar, Suraj P, Ozturk, Mumin, Tamgue, Ousman, Kawaji, Hideya, de Hoon, Michiel J L, Itoh, Masayoshi, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Bajic, Vladimir B, Guler, Reto, Brombacher, Frank, Suzuki, Harukazu

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Inter-individual variability in propofol pharmacokinetics in preterm and term neonates von Allegaert, K., Peeters, M.Y., Verbesselt, R., Tibboel, D., Naulaers, G., de Hoon, J.N., Knibbe, C.A.

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Optimization of turn-back primers in isothermal amplification von Kimura, Yasumasa, de Hoon, Michiel J L, Aoki, Shintaro, Ishizu, Yuri, Kawai, Yuki, Kogo, Yasushi, Daub, Carsten O, Lezhava, Alexander, Arner, Erik, Hayashizaki, Yoshihide

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Increased C-Reactive Protein in Young Adult Patients with Migraine von Vanmolkot, FH, Hoon, JN de

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Covariates of tramadol disposition in the first months of life von Allegaert, K., van den Anker, J.N., de Hoon, J.N., van Schaik, R.H.N., Debeer, A., Tibboel, D., Naulaers, G., Anderson, B.J.

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Prediction of transcriptional terminators in Bacillus subtilis and related species von de Hoon, Michiel J L, Makita, Yuko, Nakai, Kenta, Miyano, Satoru

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Formalin-fixed, paraffin-embedded (FFPE) tissue epigenomics using Infinium HumanMethylation450 BeadChip assays von de Ruijter, Tim C, de Hoon, Joep PJ, Slaats, Jeroen, de Vries, Bart, Janssen, Marjolein JFW, van Wezel, Tom, Aarts, Maureen JB, van Engeland, Manon, Tjan-Heijnen, Vivianne CG, Van Neste, Leander, Veeck, Jürgen

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MRK-409 (MK-0343), a GABAA receptor subtype-selective partial agonist, is a non-sedating anxiolytic in preclinical species but causes sedation in humans von Atack, JR, Wafford, KA, Street, LJ, Dawson, GR, Tye, S, Van Laere, K, Bormans, G, Sanabria-Bohórquez, SM, De Lepeleire, I, de Hoon, JN, Van Hecken, A, Burns, HD, McKernan, RM, Murphy, MG, Hargreaves, RJ

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Hierarchical Evolution of the Bacterial Sporulation Network von de Hoon, Michiel J.L., Eichenberger, Patrick, Vitkup, Dennis

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A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness von Burroughs, A Maxwell, Ando, Yoshinari, de Hoon, Michiel J L, Tomaru, Yasuhiro, Nishibu, Takahiro, Ukekawa, Ryo, Funakoshi, Taku, Kurokawa, Tsutomu, Suzuki, Harukazu, Hayashizaki, Yoshihide, Daub, Carsten O

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Prospective assessment of short-term propylene glycol tolerance in neonates von Allegaert, Karel, Vanhaesebrouck, Sophie, Kulo, Aida, Cosaert, Katrien, Verbesselt, Rene, Debeer, Anne, de Hoon, Jan

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PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease von Boele, Joost, Persson, Helena, Shin, Jay W., Ishizu, Yuri, Newie, Inga S., Søkilde, Rolf, Hawkins, Shannon M., Coarfa, Cristian, Ikeda, Kazuhiro, Takayama, Ken-ichi, Horie-Inoue, Kuniko, Ando, Yoshinari, Burroughs, A. Maxwell, Sasaki, Chihiro, Suzuki, Chizuru, Sakai, Mizuho, Aoki, Shintaro, Ogawa, Ayumi, Hasegawa, Akira, Lizio, Marina, Kaida, Kaoru, Teusink, Bas, Carninci, Piero, Suzuki, Harukazu, Inoue, Satoshi, Gunaratne, Preethi H., Rovira, Carlos, Hayashizaki, Yoshihide, de Hoon, Michiel J. L.

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Update of the FANTOM web resource: enhancement for studying noncoding genomes von Nobusada, Tomoe, Yip, Chi Wai, Agrawal, Saumya, Severin, Jessica, Abugessaisa, Imad, Hasegawa, Akira, Hon, Chung Chau, Ide, Satoru, Koido, Masaru, Kondo, Atsushi, Masuya, Hiroshi, Oki, Shinya, Tagami, Michihira, Takada, Toyoyuki, Terao, Chikashi, Thalhath, Nishad, Walker, Scott, Yasuzawa, Kayoko, Shin, Jay W, de Hoon, Michiel J L, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya

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Tramadol disposition in the very young: an attempt to assess in vivo cytochrome P-450 2D6 activity von Allegaert, K., Anderson, B.J., Verbesselt, R., Debeer, A., de Hoon, J., Devlieger, H., Van Den Anker, J.N., Tibboel, D.

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