Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem von Honorato, Rodrigo V., Koukos, Panagiotis I., Jiménez-García, Brian, Tsaregorodtsev, Andrei, Verlato, Marco, Giachetti, Andrea, Rosato, Antonio, Bonvin, Alexandre M. J. J.

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Less Is More: Coarse-Grained Integrative Modeling of Large Biomolecular Assemblies with HADDOCK von Roel-Touris, Jorge, Don, Charleen G, V. Honorato, Rodrigo, Rodrigues, João P. G. L. M, Bonvin, Alexandre M. J. J

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An antibiotic from an uncultured bacterium binds to an immutable target von Shukla, Rhythm, Peoples, Aaron J., Ludwig, Kevin C., Maity, Sourav, Derks, Maik G.N., De Benedetti, Stefania, Krueger, Annika M., Vermeulen, Bram J.A., Harbig, Theresa, Lavore, Francesca, Kumar, Raj, Honorato, Rodrigo V., Grein, Fabian, Nieselt, Kay, Liu, Yangping, Bonvin, Alexandre M.J.J., Baldus, Marc, Kubitscheck, Ulrich, Breukink, Eefjan, Achorn, Catherine, Nitti, Anthony, Schwalen, Christopher J., Spoering, Amy L., Ling, Losee Lucy, Hughes, Dallas, Lelli, Moreno, Roos, Wouter H., Lewis, Kim, Schneider, Tanja, Weingarth, Markus

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Information-driven modeling of biomolecular complexes von van Noort, Charlotte W., Honorato, Rodrigo V., Bonvin, Alexandre M.J.J.

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KVFinder: steered identification of protein cavities as a PyMOL plugin von Oliveira, Saulo H P, Ferraz, Felipe A N, Honorato, Rodrigo V, Xavier-Neto, José, Sobreira, Tiago J P, de Oliveira, Paulo S L

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MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing von Honorato, Rodrigo V., Roel-Touris, Jorge, Bonvin, Alexandre M. J. J.

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The HADDOCK2.4 web server for integrative modeling of biomolecular complexes von Honorato, Rodrigo V., Trellet, Mikael E., Jiménez-García, Brian, Schaarschmidt, Jörg J., Giulini, Marco, Reys, Victor, Koukos, Panagiotis I., Rodrigues, João P. G. L. M., Karaca, Ezgi, van Zundert, Gydo C. P., Roel-Touris, Jorge, van Noort, Charlotte W., Jandová, Zuzana, Melquiond, Adrien S. J., Bonvin, Alexandre M. J. J.

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An overview of data‐driven HADDOCK strategies in CAPRI rounds 38‐45 von Koukos, Panagiotis I., Roel‐Touris, Jorge, Ambrosetti, Francesco, Geng, Cunliang, Schaarschmidt, Jörg, Trellet, Mikael E., Melquiond, Adrien S. J., Xue, Li C., Honorato, Rodrigo V., Moreira, Irina, Kurkcuoglu, Zeynep, Vangone, Anna, Bonvin, Alexandre M. J. J.

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Integrative Modeling in the Age of Machine Learning: A Summary of HADDOCK Strategies in CAPRI Rounds 47-55 von Reys, Victor, Giulini, Marco, Cojocaru, Vlad, Engel, Anna, Xu, Xiaotong, Roel-Touris, Jorge, Geng, Cunliang, Ambrosetti, Francesco, Jiménez-García, Brian, Jandova, Zuzana, Koukos, Panagiotis I, van Noort, Charlotte, Teixeira, João M C, van Keulen, Siri C, Réau, Manon, Honorato, Rodrigo V, Bonvin, Alexandre M J J

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NMR study of the interaction between MinC and FtsZ and modeling of the FtsZ:MinC complex von Machado, Luciana E.S. F., Castellen, Patricia, Blasios, Valdir, Ribeiro-Filho, Helder V., Bisson-Filho, Alexandre W., Benites Pariente, Jhonatan S., Nogueira, Maria L.C., Sforça, Mauricio, Honorato, Rodrigo V., Lopes-de-Oliveira, Paulo S., Salinas, Roberto K., Andreu, José M., Zeri, Ana C., Gueiros-Filho, Frederico J.

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Kinase inhibitor profile for human nek1, nek6, and nek7 and analysis of the structural basis for inhibitor specificity von Moraes, Eduardo Cruz, Meirelles, Gabriela Vaz, Honorato, Rodrigo Vargas, de Souza, Tatiana de Arruda Campos Brasil, de Souza, Edmarcia Elisa, Murakami, Mario Tyago, de Oliveira, Paulo Sergio Lopes, Kobarg, Jörg

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Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment von Lensink, Marc F., Brysbaert, Guillaume, Nadzirin, Nurul, Velankar, Sameer, Chaleil, Raphaël A. G., Gerguri, Tereza, Bates, Paul A., Laine, Elodie, Carbone, Alessandra, Grudinin, Sergei, Kong, Ren, Liu, Ran‐Ran, Xu, Xi‐Ming, Shi, Hang, Chang, Shan, Eisenstein, Miriam, Karczynska, Agnieszka, Czaplewski, Cezary, Lubecka, Emilia, Lipska, Agnieszka, Krupa, Paweł, Mozolewska, Magdalena, Golon, Łukasz, Samsonov, Sergey, Liwo, Adam, Crivelli, Silvia, Pagès, Guillaume, Karasikov, Mikhail, Kadukova, Maria, Yan, Yumeng, Huang, Sheng‐You, Rosell, Mireia, Rodríguez‐Lumbreras, Luis A., Romero‐Durana, Miguel, Díaz‐Bueno, Lucía, Christoffer, Charles, Shin, Woong‐Hee, Aderinwale, Tunde, Maddhuri Venkata Subraman, Sai Raghavendra, Kihara, Daisuke, Kozakov, Dima, Vajda, Sandor, Porter, Kathryn, Padhorny, Dzmitry, Desta, Israel, Beglov, Dmitri, Ignatov, Mikhail, Kotelnikov, Sergey, Moal, Iain H., Ritchie, David W., Chauvot de Beauchêne, Isaure, Maigret, Bernard, Devignes, Marie‐Dominique, Ruiz Echartea, Maria E., Barradas‐Bautista, Didier, Cao, Zhen, Cavallo, Luigi, Oliva, Romina, Cao, Yue, Shen, Yang, Park, Taeyong, Woo, Hyeonuk, Seok, Chaok, Braitbard, Merav, Bitton, Lirane, Scheidman‐Duhovny, Dina, Dapkūnas, Justas, Olechnovič, Kliment, Venclovas, Česlovas, Kundrotas, Petras J., Belkin, Saveliy, Chakravarty, Devlina, Badal, Varsha D., Vakser, Ilya A., Vreven, Thom, Vangaveti, Sweta, Borrman, Tyler, Weng, Zhiping, Guest, Johnathan D., Gowthaman, Ragul, Pierce, Brian G., Xu, Xianjin, Qiu, Liming, Hou, Jie, Ryan Merideth, Benjamin, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Koukos, Panagiotis I., Roel‐Touris, Jorge, Ambrosetti, Francesco, Geng, Cunliang, Trellet, Mikael E., Melquiond, Adrien S. J., Xue, Li, Jiménez‐García, Brian, Noort, Charlotte W., Honorato, Rodrigo V., Bonvin, Alexandre M. J. J., Wodak, Shoshana J.

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ARCTIC-3D: automatic retrieval and clustering of interfaces in complexes from 3D structural information von Giulini, Marco, Honorato, Rodrigo V., Rivera, Jesús L., Bonvin, Alexandre M. J. J.

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Thioredoxin-1 Negatively Modulates ADAM17 Activity Through Direct Binding and Indirect Reductive Activity von Granato, Daniela C, E Costa, Rute A P, Kawahara, Rebeca, Yokoo, Sami, Aragão, Annelize Z, Domingues, Romênia R, Pauletti, Bianca A, Honorato, Rodrigo V, Fattori, Juliana, Figueira, Ana Carolina M, Oliveira, Paulo S L, Consonni, Silvio R, Fernandes, Denise, Laurindo, Francisco, Hansen, Hinrich P, Paes Leme, Adriana F

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Calcium and magnesium ions modulate the oligomeric state and function of mitochondrial 2-Cys peroxiredoxins in Leishmania parasites von Morais, Mariana A.B., Giuseppe, Priscila O., Souza, Tatiana A. C.B., Castro, Helena, Honorato, Rodrigo V., Oliveira, Paulo S.L., Netto, Luis E.S., Tomas, Ana M., Murakami, Mario T.

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A specific interdomain interaction preserves the structural and binding properties of the ModA protein from the phytopathogen Xanthomonas citri domain interaction and transport in... von Santacruz-Perez, Carolina, Pegos, Vanessa Rodrigues, Honorato, Rodrigo V., Verli, Hugo, Lindahl, Erik, Barbosa, João Alexandre Ribeiro Gonçalves, Balan, Andrea

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P-I class metalloproteinase from Bothrops moojeni venom is a post-proline cleaving peptidase with kininogenase activity: Insights into substrate selectivity and kinetic behavior von Okamoto, Débora N., Kondo, Marcia Y., Oliveira, Lilian C.G., Honorato, Rodrigo V., Zanphorlin, Leticia M., Coronado, Monika A., Araújo, Mariana S., da Motta, Guacyara, Veronez, Camila L., Andrade, Sheila S., Oliveira, Paulo S.L., Arni, Raghuvir K., Cintra, Adelia C.O., Sampaio, Suely V., Juliano, Maria A., Juliano, Luiz, Murakami, Mário T., Gouvea, Iuri E.

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Structural Insights into Functional Overlapping and Differentiation among Myosin V Motors von Nascimento, Andrey F.Z., Trindade, Daniel M., Tonoli, Celisa C.C., de Giuseppe, Priscila O., Assis, Leandro H.P., Honorato, Rodrigo V., de Oliveira, Paulo S.L., Mahajan, Pravin, Burgess-Brown, Nicola A., von Delft, Frank, Larson, Roy E., Murakami, Mario T.

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Structural studies of the Trypanosoma cruzi Old Yellow Enzyme: Insights into enzyme dynamics and specificity von Murakami, Mário T., Rodrigues, Nathalia C., Gava, Lisandra M., Honorato, Rodrigo V., Canduri, Fernanda, Barbosa, Leandro R.S., Oliva, Glaucius, Borges, Júlio C.

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Identification of Novel Interaction between ADAM17 (a Disintegrin and Metalloprotease 17) and Thioredoxin-1 von Aragão, Annelize Z.B., Nogueira, Maria Luiza C., Granato, Daniela C., Simabuco, Fernando M., Honorato, Rodrigo V., Hoffman, Zaira, Yokoo, Sami, Laurindo, Francisco R.M., Squina, Fabio M., Zeri, Ana Carolina M., Oliveira, Paulo S.L., Sherman, Nicholas E., Paes Leme, Adriana F.

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