The Matrisome: In Silico Definition and In Vivo Characterization by Proteomics of Normal and Tumor Extracellular Matrices von Naba, Alexandra, Clauser, Karl R., Hoersch, Sebastian, Liu, Hui, Carr, Steven A., Hynes, Richard O.

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Periostin shows increased evolutionary plasticity in its alternatively spliced region von Hoersch, Sebastian, Andrade-Navarro, Miguel A

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Towards definition of an ECM parts list: An advance on GO categories von Naba, Alexandra, Hoersch, Sebastian, Hynes, Richard O.

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Benchmarking tools for transcription factor prioritization von Santana, Leonor Schubert, Reyes, Alejandro, Hoersch, Sebastian, Ferrero, Enrico, Kolter, Christian, Gaulis, Swann, Steinhauser, Sebastian

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Differential Tks5 isoform expression contributes to metastatic invasion of lung adenocarcinoma von Li, Carman Man-Chung, Chen, Guoan, Dayton, Talya L, Kim-Kiselak, Caroline, Hoersch, Sebastian, Whittaker, Charles A, Bronson, Roderick T, Beer, David G, Winslow, Monte M, Jacks, Tyler

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Gene-signature-derived IC50s/EC50s reflect the potency of causative upstream targets and downstream phenotypes von Renner, Steffen, Bergsdorf, Christian, Bouhelal, Rochdi, Koziczak-Holbro, Magdalena, Amati, Andrea Marco, Techer-Etienne, Valerie, Flotte, Ludivine, Reymann, Nicole, Kapur, Karen, Hoersch, Sebastian, Oakeley, Edward James, Schuffenhauer, Ansgar, Gubler, Hanspeter, Lounkine, Eugen, Farmer, Pierre

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Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery von Zhang, GuangJun, Hoersch, Sebastian, Amsterdam, Adam, Whittaker, Charles A, Beert, Eline, Catchen, Julian M, Farrington, Sarah, Postlethwait, John H, Legius, Eric, Hopkins, Nancy, Lees, Jacqueline A

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Highly aneuploid zebrafish malignant peripheral nerve sheath tumors have genetic alterations similar to human cancers von Zhang, GuangJun, Hoersch, Sebastian, Amsterdam, Adam, Whittaker, Charles A., Lees, Jacqueline A., Hopkins, Nancy

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In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans von Ma, Long, Tan, Zhiping, Teng, Yanling, Hoersch, Sebastian, Horvitz, H Robert

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RNA interference and retinoblastoma-related genes are required for repression of endogenous siRNA targets in Caenorhabditis elegans von Grishok, Alla, Hoersch, Sebastian, Sharp, Phillip A

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Gene Expression Profiles Predict Early Relapse in Ovarian Cancer after Platinum-Paclitaxel Chemotherapy von HARTMANN, Lynn C, LU, Karen H, ROSS, Jeffrey S, HOERSCH, Sebastian, SHRIDHAR, Viji, LILLIE, James, KAUFMANN, Scott H, CLARK, Edwin A, DAMOKOSH, Andrew I, LINETTE, Gerald P, CLIBY, William A, KALLI, Kimberly R, GERSHENSON, David, BAST, Robert C, STEC, James, IARTCHOUK, Natalia, SMITH, David I

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A conserved PHD finger protein and endogenous RNAi modulate insulin signaling in Caenorhabditis elegans von Mansisidor, Andres R, Cecere, Germano, Hoersch, Sebastian, Jensen, Morten B, Kawli, Trupti, Kennedy, Lisa M, Chavez, Violeta, Tan, Man-Wah, Lieb, Jason D, Grishok, Alla

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Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape von Cecere, Germano, Hoersch, Sebastian, O'Keeffe, Sean, Sachidanandam, Ravi, Grishok, Alla

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Suppression of lung adenocarcinoma progression by Nkx2-1 von Winslow, Monte M., Dayton, Talya L., Verhaak, Roel G. W., Kim-Kiselak, Caroline, Snyder, Eric L., Feldser, David M., Hubbard, Diana D., DuPage, Michel J., Whittaker, Charles A., Hoersch, Sebastian, Yoon, Stephanie, Crowley, Denise, Bronson, Roderick T., Chiang, Derek Y., Meyerson, Matthew, Jacks, Tyler

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Systematic RNA interference reveals that oncogenic KRAS -driven cancers require TBK1 von Kim, So Young, Sabatini, David M, Michel, Kathrin, Tamayo, Pablo, Weir, Barbara A, Le, Hanh, Mermel, Craig, Gupta, Piyush B, Meyerson, Matthew, Hahn, William C, Schinzel, Anna C, Hoersch, Sebastian, Lander, Eric S, Sandy, Peter, Mesirov, Jill P, Sheng, Qing, Boehm, Jesse S, Meylan, Etienne, Gilliland, D. Gary, Barbie, David A, Sos, Martin L, Fröhling, Stefan, Chan, Edmond M, Wittner, Ben S, Ramaswamy, Sridhar, Livingston, David M, Root, David E, Reiling, Jan H, Wadlow, Raymond C, Dunn, Ian F, Thomas, Roman K, Scholl, Claudia, Moody, Susan E, Silver, Serena J, Jacks, Tyler

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AKT-Independent Signaling Downstream of Oncogenic PIK3CA Mutations in Human Cancer von Vasudevan, Krishna M., Barbie, David A., Davies, Michael A., Rabinovsky, Rosalia, McNear, Chontelle J., Kim, Jessica J., Hennessy, Bryan T., Tseng, Hsiuyi, Pochanard, Panisa, Kim, So Young, Dunn, Ian F., Schinzel, Anna C., Sandy, Peter, Hoersch, Sebastian, Sheng, Qing, Gupta, Piyush B., Boehm, Jesse S., Reiling, Jan H., Silver, Serena, Lu, Yiling, Stemke-Hale, Katherine, Dutta, Bhaskar, Joy, Corwin, Sahin, Aysegul A., Gonzalez-Angulo, Ana Maria, Lluch, Ana, Rameh, Lucia E., Jacks, Tyler, Root, David E., Lander, Eric S., Mills, Gordon B., Hahn, William C., Sellers, William R., Garraway, Levi A.

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Integrative Proteogenomics for Differential Expression and Splicing Variation in a DM1 Mouse Model von Solovyeva, Elizaveta M., Utzinger, Stephan, Vissières, Alexandra, Mitchelmore, Joanna, Ahrné, Erik, Hermes, Erwin, Poetsch, Tania, Ronco, Marie, Bidinosti, Michael, Merkl, Claudia, Serluca, Fabrizio C., Fessenden, James, Naumann, Ulrike, Voshol, Hans, Meyer, Angelika S., Hoersch, Sebastian

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New insights into molecular changes in skeletal muscle aging and disease: Differential alternative splicing and senescence von Solovyeva, Elizaveta M., Ibebunjo, Chikwendu, Utzinger, Stephan, Eash, John K., Dunbar, Andrew, Naumann, Ulrike, Zhang, Yunyu, Serluca, Fabrizio C., Demirci, Sabrina, Oberhauser, Berndt, Black, Frederique, Rausch, Martin, Hoersch, Sebastian, Meyer, Angelika S.

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The ZFP-1(AF10)/DOT-1 Complex Opposes H2B Ubiquitination to Reduce Pol II Transcription von Cecere, Germano, Hoersch, Sebastian, Jensen, Morten B., Dixit, Shiv, Grishok, Alla

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Nkx2-1 Represses a Latent Gastric Differentiation Program in Lung Adenocarcinoma von Snyder, Eric L., Watanabe, Hideo, Magendantz, Margaret, Hoersch, Sebastian, Chen, Tiffany A., Wang, Diana G., Crowley, Denise, Whittaker, Charles A., Meyerson, Matthew, Kimura, Shioko, Jacks, Tyler

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