CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data von Lin, Peijie, Troup, Michael, Ho, Joshua W K

Volltext

Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding von Szczesnik, Tomasz, Ho, Joshua W K, Sherwood, Richard

Volltext

Generalized and scalable trajectory inference in single-cell omics data with VIA von Stassen, Shobana V., Yip, Gwinky G. K., Wong, Kenneth K. Y., Ho, Joshua W. K., Tsia, Kevin K.

Volltext

DCATS: differential composition analysis for flexible single-cell experimental designs von Lin, Xinyi, Chau, Chuen, Ma, Kun, Huang, Yuanhua, Ho, Joshua W K

Volltext

Altered human gut virome in patients undergoing antibiotics therapy for Helicobacter pylori von Wang, Lingling, Yao, Haobin, Morgan, Daniel C., Lau, Kam Shing, Leung, Suet Yi, Ho, Joshua W. K., Leung, Wai K.

Volltext

MQuad enables clonal substructure discovery using single cell mitochondrial variants von Kwok, Aaron Wing Cheung, Qiao, Chen, Huang, Rongting, Sham, Mai-Har, Ho, Joshua W. K., Huang, Yuanhua

Volltext

StaVia: spatially and temporally aware cartography with higher-order random walks for cell atlases von Stassen, Shobana V, Kobashi, Minato, Lam, Edmund Y, Huang, Yuanhua, Ho, Joshua W K, Tsia, Kevin K

Volltext

Automatic flow delay through passive wax valves for paper-based analytical devices von Meng, Haixu, Chen, Chang, Zhu, Yonggang, Li, Zhengtu, Ye, Feng, Ho, Joshua W. K, Chen, Huaying

Volltext

Multi-omic profiling reveals associations between the gut mucosal microbiome, the metabolome, and host DNA methylation associated gene expression in patients with colorectal cancer von Wang, Qing, Ye, Jianzhong, Fang, Daiqiong, Lv, Longxian, Wu, Wenrui, Shi, Ding, Li, Yating, Yang, Liya, Bian, Xiaoyuan, Wu, Jingjing, Jiang, Xianwan, Wang, Kaicen, Wang, Qiangqiang, Hodson, Mark P, Thibaut, Loïc M, Ho, Joshua W K, Giannoulatou, Eleni, Li, Lanjuan

Volltext

An innovative approach for testing bioinformatics programs using metamorphic testing von Chen, Tsong Yueh, Ho, Joshua W K, Liu, Huai, Xie, Xiaoyuan

Volltext

Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest von Wang, Xin, Lin, Peijie, Ho, Joshua W K

Volltext

Machine learning-coupled combinatorial mutagenesis enables resource-efficient engineering of CRISPR-Cas9 genome editor activities von Thean, Dawn G. L., Chu, Hoi Yee, Fong, John H. C., Chan, Becky K. C., Zhou, Peng, Kwok, Cynthia C. S., Chan, Yee Man, Mak, Silvia Y. L., Choi, Gigi C. G., Ho, Joshua W. K., Zheng, Zongli, Wong, Alan S. L.

Volltext

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis von Ho, Joshua W K, Bishop, Eric, Karchenko, Peter V, Nègre, Nicolas, White, Kevin P, Park, Peter J

Volltext

Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco von Yang, Andrian, Kishore, Abhinav, Phipps, Benjamin, Ho, Joshua W K

Volltext

Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie von Giannoulatou, Eleni, Park, Shin-Ho, Humphreys, David T, Ho, Joshua W K

Volltext

The method to quantify cell elasticity based on the precise measurement of pressure inducing cell deformation in microfluidic channels von Chen, Zhenlin, Yip, Tsz Fung, Zhu, Yonggang, Ho, Joshua W. K., Chen, Huaying

Volltext

Targeted Next-Generation Sequencing Identifies Pathogenic Variants in Familial Congenital Heart Disease von Blue, Gillian M., MSc, Kirk, Edwin P., MBBS, PhD, Giannoulatou, Eleni, MEng, MPhil, DPhil, Dunwoodie, Sally L., PhD, Ho, Joshua W.K., PhD, Hilton, Desiree C.K., PhD, White, Susan M., MBBS, Sholler, Gary F., MBBS (Hons), Harvey, Richard P., PhD, Winlaw, David S., MBBS, MD

Volltext

iSyTE 2.0: a database for expression-based gene discovery in the eye von Kakrana, Atul, Yang, Andrian, Anand, Deepti, Djordjevic, Djordje, Ramachandruni, Deepti, Singh, Abhyudai, Huang, Hongzhan, Ho, Joshua W K, Lachke, Salil A

Volltext

PARC: ultrafast and accurate clustering of phenotypic data of millions of single cells von Stassen, Shobana V, Siu, Dickson M D, Lee, Kelvin C M, Ho, Joshua W K, So, Hayden K H, Tsia, Kevin K

Volltext

Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury von Farbehi, Nona, Patrick, Ralph, Dorison, Aude, Xaymardan, Munira, Janbandhu, Vaibhao, Wystub-Lis, Katharina, Ho, Joshua Wk, Nordon, Robert E, Harvey, Richard P

Volltext