Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer von Li, Meng, Balch, Curt, Montgomery, John S, Jeong, Mikyoung, Chung, Jae Hoon, Yan, Pearlly, Huang, Tim H M, Kim, Sun, Nephew, Kenneth P

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Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array von Singer, Gregory A C, Wu, Jiejun, Yan, Pearlly, Plass, Christoph, Huang, Tim H M, Davuluri, Ramana V

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STAT3 can be activated through paracrine signaling in breast epithelial cells von Lieblein, Jacqueline C, Ball, Sarah, Hutzen, Brian, Sasser, A Kate, Lin, Huey-Jen, Huang, Tim Hm, Hall, Brett M, Lin, Jiayuh

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QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions von Liu, Bin, Yi, Jimmy, Sv, Aishwarya, Lan, Xun, Ma, Yilin, Huang, Tim H M, Leone, Gustavo, Jin, Victor X

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Identifying hypermethylated CpG islands using a quantile regression model von Sun, Shuying, Chen, Zhengyi, Yan, Pearlly S, Huang, Yi-Wen, Huang, Tim H M, Lin, Shili

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A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology von Feng, Weixing, Liu, Yunlong, Wu, Jiejun, Nephew, Kenneth P, Huang, Tim H M, Li, Lang

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Identification of novel DNA methylation inhibitors via a two-component reporter gene system von Lin, Yi-Shiuan, Shaw, Arthur Y, Wang, Shi-Gang, Hsu, Chia-Chen, Teng, I-Wen, Tseng, Min-Jen, Huang, Tim H M, Chen, Ching-Shih, Leu, Yu-Wei, Hsiao, Shu-Huei

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Identifying differentially methylated genes using mixed effect and generalized least square models von Sun, Shuying, Yan, Pearlly S, Huang, Tim H M, Lin, Shili

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Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands von Dai, Wei, Teodoridis, Jens M, Graham, Janet, Zeller, Constanze, Huang, Tim H M, Yan, Pearlly, Vass, J Keith, Brown, Robert, Paul, Jim

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Probe signal correction for differential methylation hybridization experiments von Potter, Dustin P, Yan, Pearlly, Huang, Tim H M, Lin, Shili

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Preprocessing differential methylation hybridization microarray data von Sun, Shuying, Huang, Yi-Wen, Yan, Pearlly S, Huang, Tim Hm, Lin, Shili

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Histone Deacetylase HDAC8 Promotes Insulin Resistance and β-Catenin Activation in NAFLD-Associated Hepatocellular Carcinoma von Tian, Yuan, Wong, Vincent W S, Wong, Grace L H, Yang, Weiqin, Sun, Hanyong, Shen, Jiayun, Tong, Joanna H M, Go, Minnie Y Y, Cheung, Yue S, Lai, Paul B S, Zhou, Mingyan, Xu, Gang, Huang, Tim H M, Yu, Jun, To, Ka F, Cheng, Alfred S L, Chan, Henry L Y

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An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules von Qin, Huaxia, Chan, Michael W Y, Liyanarachchi, Sandya, Balch, Curtis, Potter, Dustin, Souriraj, Irene J, Cheng, Alfred S L, Agosto-Perez, Francisco J, Nikonova, Elena V, Yan, Pearlly S, Lin, Huey-Jen, Nephew, Kenneth P, Saltz, Joel H, Showe, Louise C, Huang, Tim H M, Davuluri, Ramana V

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Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction von Adnan, Nahim, Zand, Maryam, Huang, Tim H. M., Ruan, Jianhua

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RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation von Wang, Guohua, Wang, Yadong, Shen, Changyu, Huang, Yi-wen, Huang, Kun, Huang, Tim H M, Nephew, Kenneth P, Li, Lang, Liu, Yunlong

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Genome-wide DNA methylation profiling reveals parity-associated hypermethylation of FOXA1 von Ghosh, Sagar, Gu, Fei, Wang, Chou-Miin, Lin, Chun-Lin, Liu, Joseph, Wang, Howard, Ravdin, Peter, Hu, Yanfen, Huang, Tim H. M., Li, Rong

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Dominant-negative histone H3 lysine 27 mutant derepresses silenced tumor suppressor genes and reverses the drug-resistant phenotype in cancer cells von ABBOSH, Phillip H, MONTGOMERY, John S, HUANG, Tim H. M, NEPHEW, Kenneth P, STARKEY, Jason A, NOVOTNY, Milos, ZUHOWSKI, Eleanor G, EGORIN, Merrill J, MOSEMAN, Annie P, GOLAS, Adam, BRANNON, Kate M, BALCH, Curtis

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The influence of cis-regulatory elements on DNA methylation fidelity von Teng, Mingxiang, Balch, Curt, Liu, Yunlong, Li, Meng, Huang, Tim H M, Wang, Yadong, Nephew, Kenneth P, Li, Lang

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Multivalent epigenetic marks confer microenvironment-responsive epigenetic plasticity to ovarian cancer cells von Bapat, Sharmila A., Jin, Victor, Berry, Nicholas, Balch, Curt, Sharma, Neeti, Kurrey, Nawneet, Zhang, Shu, Fang, Fang, Lan, Xun, Li, Meng, Kennedy, Brian, Bigsby, Robert M., Huang, Tim H-M, Nephew, Kenneth P.

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A modulator based regulatory network for ERα signaling pathway von Wu, Heng-Yi, Zheng, Pengyue, Jiang, Guanglong, Liu, Yunlong, Nephew, Kenneth P, Huang, Tim H M, Li, Lang

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