Clustal W and Clustal X version 2.0 von Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson, T.J., Higgins, D.G.

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Getting better with bifidobacteria von Leahy, S.C, Higgins, D.G, Fitzgerald, G.F, van Sinderen, D

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MADE4: an R package for multivariate analysis of gene expression data von Culhane, Aedín C., Thioulouse, Jean, Perrière, Guy, Higgins, Desmond G.

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BK Virus Encoded MicroRNAs Are Present in Blood of Renal Transplant Recipients With BK Viral Nephropathy von Li, J. Y. Z., McNicholas, K., Yong, T. Y., Rao, N., Coates, P. T. H., Higgins, G. D., Carroll, R. P., Woodman, R. J., Michael, M. Z., Gleadle, J. M.

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Operational modal analysis of a rotating structure using image-based tracking continuously scanning laser Doppler vibrometry via a novel edge detection method von Lyu, L.F., Higgins, G.D., Zhu, W.D.

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COFFEE: an objective function for multiple sequence alignments von Notredame, C, Holm, L, Higgins, D.G

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Analysis of differential gene expression in colorectal cancer and stroma using fluorescence-activated cell sorting purification von Smith, M J, Culhane, A C, Donovan, M, Coffey, J C, Barry, B D, Kelly, M A, Higgins, D G, Wang, J H, Kirwan, W O, Cotter, T G, Redmond, H P

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Multiple sequence alignment with the Clustal series of programs von Chenna, Ramu, Sugawara, Hideaki, Koike, Tadashi, Lopez, Rodrigo, Gibson, Toby J., Higgins, Desmond G., Thompson, Julie D.

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R-Coffee: a method for multiple alignment of non-coding RNA von Wilm, Andreas, Higgins, Desmond G, Notredame, Cédric

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T-Coffee: A novel method for fast and accurate multiple sequence alignment von Notredame, C, Higgins, D G, Heringa, J

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M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods von Moretti, Sebastien, Armougom, Fabrice, Wallace, Iain M, Higgins, Desmond G, Jongeneel, Cornelius V, Notredame, Cedric

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Fast and sensitive multiple sequence alignments on a microcomputer von Higgins, D.G, Sharp, P.M

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3DCoffee: Combining Protein Sequences and Structures within Multiple Sequence Alignments von O'Sullivan, Orla, Suhre, Karsten, Abergel, Chantal, Higgins, Desmond G, Notredame, Cédric

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Evaluation of iterative alignment algorithms for multiple alignment von Wallace, Iain M., Orla, O'Sullivan, Higgins, Desmond G.

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Mind the Gaps: Progress in Progressive Alignment von Higgins, D. G., Blackshields, G., Wallace, I. M.

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Finding flexible patterns in unaligned protein sequences von Jonassen, Inge, Collins, John F., Higgins, Desmond G.

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CLUSTAL: a package for performing multiple sequence alignment on a microcomputer von Higgins, Desmond G., Sharp, Paul M.

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Improved sensitivity of profile searches through the use of sequence weights and gap excision von Thompson, J.D, Higgins, D.G, Gibson, T.J

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CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools von Thompson, J.D, Gibson, T.J, Plewniak, F, Jeanmougin, F, Higgins, D.G

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Multiple sequence alignment with Clustal X von Jeanmougin, François, Thompson, Julie D., Gouy, Manolo, Higgins, Desmond G., Gibson, Toby J.

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