LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets von Wilm, Andreas, Aw, Pauline Poh Kim, Bertrand, Denis, Yeo, Grace Hui Ting, Ong, Swee Hoe, Wong, Chang Hua, Khor, Chiea Chuen, Petric, Rosemary, Hibberd, Martin Lloyd, Nagarajan, Niranjan

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Enterococcus faecalis from healthy infants modulates inflammation through MAPK signaling pathways von Wang, Shugui, Hibberd, Martin Lloyd, Pettersson, Sven, Lee, Yuan Kun

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Intestinal microbiota regulate xenobiotic metabolism in the liver von Björkholm, Britta, Bok, Chek Mei, Lundin, Annelie, Rafter, Joseph, Hibberd, Martin Lloyd, Pettersson, Sven

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Outbreak of Zika virus infection in Singapore: an epidemiological, entomological, virological, and clinical analysis von Ho, Zheng Jie Marc, Hapuarachchi, Hapuarachchige Chanditha, Barkham, Timothy, Chow, Angela, Ng, Lee Ching, Lee, Jian Ming Vernon, Leo, Yee Sin, Prem, Kiesha, Lim, Yue Hui Georgina, de Sessions, Paola F, Rabaa, Maia A, Chong, Chee Seng, Tan, Cheong Huat, Rajarethinam, Jayanthi, Tan, Junhao, Anderson, Danielle E, Ong, Xinmei, Cook, Alex R, Chong, Chia Yin, Hsu, Li Yang, Yap, Grace, Lai, Yee Ling, Chawla, Tanu, Pan, Louise, Sim, Shuzhen, Chen, I-Cheng Mark, Thoon, Koh Cheng, Yung, Chee Fu, Li, Jia Hui, Ng, Hee Ling Deborah, Nandar, Khine, Ooi, Peng Lim, Lin, Raymond Tzer Pin, Aw, Pauline, Uehara, Anna, Pratim De, Partha, Soon, Wendy, Hibberd, Martin Lloyd, Ng, Huck Hui, Maurer-Stroh, Sebastian, Sessions, October M

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Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences von Ong, Swee Hoe, Kukkillaya, Vinutha Uppoor, Wilm, Andreas, Lay, Christophe, Ho, Eliza Xin Pei, Low, Louie, Hibberd, Martin Lloyd, Nagarajan, Niranjan

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Establishment of the nasal microbiota in the first 18 months of life: Correlation with early-onset rhinitis and wheezing von Ta, Le Duc Huy, Yap, Gaik Chin, Tay, Carina Jing Xuan, Lim, Alicia Shi Min, Huang, Chiung-Hui, Chu, Collins Wenhan, De Sessions, Paola Florez, Shek, Lynette P., Goh, Anne, Van Bever, Hugo P.S., Teoh, Oon Hoe, Soh, Jian Yi, Thomas, Biju, Ramamurthy, Mahesh Babu, Goh, Daniel Y.T., Lay, Christophe, Soh, Shu-E, Chan, Yiong Huak, Saw, Seang-Mei, Kwek, Kenneth, Chong, Yap-Seng, Godfrey, Keith M., Hibberd, Martin Lloyd, Lee, Bee Wah

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Sensitive detection of chromatin-altering polymorphisms reveals autoimmune disease mechanisms von del Rosario, Ricardo Cruz-Herrera, Poschmann, Jeremie, Rouam, Sigrid Laure, Png, Eileen, Khor, Chiea Chuen, Hibberd, Martin Lloyd, Prabhakar, Shyam

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Genetic diversity of Streptococcus pneumoniae causing meningitis and sepsis in Singapore during the first year of PCV7 implementation von Jauneikaite, Elita, Mary Carnon Jefferies, Johanna, William Vere Churton, Nicholas, Tzer Pin Lin, Raymond, Lloyd Hibberd, Martin, Charles Clarke, Stuart

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Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker von Nookaew, Intawat, Thorell, Kaisa, Worah, Kuntal, Wang, Shugui, Hibberd, Martin Lloyd, Sjövall, Henrik, Pettersson, Sven, Nielsen, Jens, Lundin, Samuel B

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Chronic Infection With Camelid Hepatitis E Virus in a Liver Transplant Recipient Who Regularly Consumes Camel Meat and Milk von Lee, Guan-Huei, Tan, Boon-Huan, Chi-Yuan Teo, Esmeralda, Lim, Seng-Gee, Dan, Yock-Young, Wee, Aileen, Kim Aw, Pauline Poh, Zhu, Yuan, Hibberd, Martin Lloyd, Tan, Chee-Kiat, Purdy, Michael A, Teo, Chong-Gee

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Reduction of HBV replication prolongs the early immunological response to IFNα therapy von Tan, Anthony T, Hoang, Long Truong, Chin, Daniel, Rasmussen, Erik, Lopatin, Uri, Hart, Stefan, Bitter, Hans, Chu, Tom, Gruenbaum, Lore, Ravindran, Palani, Zhong, Hua, Gane, Ed, Lim, Seng Gee, Chow, Wan Cheng, Chen, Pei-Jer, Petric, Rosemary, Bertoletti, Antonio, Hibberd, Martin Lloyd

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Transcriptional Profiling of Mycobacterium tuberculosis Exposed to In Vitro Lysosomal Stress von Lin, Wenwei, de Sessions, Paola Florez, Teoh, Garrett Hor Keong, Mohamed, Ahmad Naim Nazri, Zhu, Yuan O, Koh, Vanessa Hui Qi, Ang, Michelle Lay Teng, Dedon, Peter C, Hibberd, Martin Lloyd, Alonso, Sylvie

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Enterococcus faecalis from healthy infants modulates inflammation through MAPK signaling pathways von Wang, Shugui, Hibberd, Martin Lloyd, Pettersson, Sven, Lee, Yuan Kun

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ISL1 is a major susceptibility gene for classic bladder exstrophy and a regulator of urinary tract development von Zhang, Rong, Knapp, Michael, Suzuki, Kentaro, Kajioka, Daiki, Schmidt, Johanna M., Winkler, Jonas, Yilmaz, Öznur, Pleschka, Michael, Cao, Jia, Kockum, Christina Clementson, Barker, Gillian, Holmdahl, Gundela, Beaman, Glenda, Keene, David, Woolf, Adrian S., Cervellione, Raimondo M., Cheng, Wei, Wilkins, Simon, Gearhart, John P., Sirchia, Fabio, Di Grazia, Massimo, Ebert, Anne-Karolin, Rösch, Wolfgang, Ellinger, Jörg, Jenetzky, Ekkehart, Zwink, Nadine, Feitz, Wout F., Marcelis, Carlo, Schumacher, Johannes, Martinón-Torres, Federico, Hibberd, Martin Lloyd, Khor, Chiea Chuen, Heilmann-Heimbach, Stefanie, Barth, Sandra, Boyadjiev, Simeon A., Brusco, Alfredo, Ludwig, Michael, Newman, William, Nordenskjöld, Agneta, Yamada, Gen, Odermatt, Benjamin, Reutter, Heiko

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Next-Generation Whole Genome Sequencing of Dengue Virus von Aw, Pauline Poh Kim, de Sessions, Paola Florez, Wilm, Andreas, Hoang, Long Truong, Nagarajan, Niranjan, Sessions, October M., Hibberd, Martin Lloyd

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Patient-based transcriptome-wide analysis identify interferon and ubiquination pathways as potential predictors of influenza A disease severity von Hoang, Long Truong, Tolfvenstam, Thomas, Ooi, Eng Eong, Khor, Chiea Chuen, Naim, Ahmand Nazri Mohamed, Ho, Eliza Xin Pei, Ong, Swee Hoe, Wertheim, Heiman F, Fox, Annette, Van Vinh Nguyen, Chau, Nghiem, Ngoc My, Ha, Tuan Manh, Thi Ngoc Tran, Anh, Tambayah, Paul, Lin, Raymond, Sangsajja, Chariya, Manosuthi, Weerawat, Chuchottaworn, Chareon, Sansayunh, Piamlarp, Chotpitayasunondh, Tawee, Suntarattiwong, Piyarat, Chokephaibulkit, Kulkanya, Puthavathana, Pilaipan, de Jong, Menno D, Farrar, Jeremy, van Doorn, H Rogier, Hibberd, Martin Lloyd

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Establishment of the nasal microbiota in the first 18 months of life: Correlation with early-onset rhinitis and wheezing von Ta, Le Duc Huy, Yap, Gaik Chin, Tay, Carina Jing Xuan, Lim, Alicia Shi Min, Huang, Chiung-Hui, Chu, Collins Wenhan, De Sessions, Paola Florez, Shek, Lynette P, Goh, Anne, Van Bever, Hugo PS, Teoh, Oon Hoe, Soh, Jian Yi, Thomas, Biju, Ramamurthy, Mahesh Babu, Goh, Daniel YT, Lay, Christophe, Soh, Shu-E, Chan, Yiong Huak, Saw, Seang-Mei, Kwek, Kenneth, Chong, Yap-Seng, Godfrey, Keith M, Hibberd, Martin Lloyd, Lee, Bee Wah

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TM4SF20 Ancestral Deletion and Susceptibility to a Pediatric Disorder of Early Language Delay and Cerebral White Matter Hyperintensities von Wiszniewski, Wojciech, Hunter, Jill V., Hanchard, Neil A., Willer, Jason R., Shaw, Chad, Tian, Qi, Illner, Anna, Wang, Xueqing, Cheung, Sau W., Patel, Ankita, Campbell, Ian M., Gelowani, Violet, Hixson, Patricia, Ester, Audrey R., Azamian, Mahshid S., Potocki, Lorraine, Zapata, Gladys, Hernandez, Patricia P., Ramocki, Melissa B., Santos-Cortez, Regie L.P., Wang, Gao, York, Michele K., Justice, Monica J., Chu, Zili D., Bader, Patricia I., Omo-Griffith, Lisa, Madduri, Nirupama S., Scharer, Gunter, Crawford, Heather P., Yanatatsaneejit, Pattamawadee, Eifert, Anna, Kerr, Jeffery, Bacino, Carlos A., Franklin, Adiaha I.A., Goin-Kochel, Robin P., Simpson, Gayle, Immken, Ladonna, Haque, Muhammad E., Stosic, Marija, Williams, Misti D., Morgan, Thomas M., Pruthi, Sumit, Omary, Reed, Boyadjiev, Simeon A., Win, Kay K., Thida, Aye, Hurles, Matthew, Hibberd, Martin Lloyd, Khor, Chiea Chuen, Van Vinh Chau, Nguyen, Gallagher, Thomas E., Mutirangura, Apiwat, Stankiewicz, Pawel, Beaudet, Arthur L., Maletic-Savatic, Mirjana, Rosenfeld, Jill A., Shaffer, Lisa G., Davis, Erica E., Belmont, John W., Dunstan, Sarah, Simmons, Cameron P., Bonnen, Penelope E., Leal, Suzanne M., Katsanis, Nicholas, Lupski, James R., Lalani, Seema R.

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Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences von Ong, Swee Hoe, Kukkillaya, Vinutha Uppoor, Wilm, Andreas, Lay, Christophe, Ho, Eliza Xin Pei, Low, Louie, Hibberd, Martin Lloyd, Nagarajan, Niranjan

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ISL1 is a major susceptibility gene for classic bladder exstrophy and a regulator of urinary tract development von Zhang, Rong, Knapp, Michael, Suzuki, Kentaro, Kajioka, Daiki, Schmidt, Johanna M, Winkler, Jonas, Yilmaz, Öznur, Pleschka, Michael, Cao, Jia, Kockum, Christina Clementson, Barker, Gillian, Holmdahl, Gundela, Beaman, Glenda, Keene, David, Woolf, Adrian S, Cervellione, Raimondo M, Cheng, Wei, Wilkins, Simon, Gearhart, John P, Sirchia, Fabio, Di Grazia, Massimo, Ebert, Anne-Karolin, Rösch, Wolfgang, Ellinger, Jörg, Jenetzky, Ekkehart, Zwink, Nadine, Feitz, Wout F, Marcelis, Carlo, Schumacher, Johannes, Martinón-Torres, Federico, Hibberd, Martin Lloyd, Khor, Chiea Chuen, Heilmann-Heimbach, Stefanie, Barth, Sandra, Boyadjiev, Simeon A, Brusco, Alfredo, Ludwig, Michael, Newman, William, Nordenskjöld, Agneta, Yamada, Gen, Odermatt, Benjamin, Reutter, Heiko

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