The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies von Shi, Leming, Jones, Wendell D, Jensen, Roderick V, Harris, Stephen C, Perkins, Roger G, Goodsaid, Federico M, Guo, Lei, Croner, Lisa J, Boysen, Cecilie, Fang, Hong, Qian, Feng, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick J, Fan, Xiao-Hui, Frueh, Felix W, Fuscoe, James C, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest S, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron L, Puri, Raj K, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue Jane, Warrington, Janet A, Willey, James C, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Wolfinger, Russell D, Tong, Weida

Volltext

metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response von Schwartz, Scott, Friedberg, Iddo, Ivanov, Ivan V, Davidson, Laurie A, Goldsby, Jennifer S, Dahl, David B, Herman, Damir, Wang, Mei, Donovan, Sharon M, Chapkin, Robert S

Volltext

Analysis of cancer metabolism with high-throughput technologies von Markovets, Aleksandra A, Herman, Damir

Volltext

Using RNA sample titrations to assess microarray platform performance and normalization techniques von Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir

Volltext

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models von Shi, Leming, Campbell, Gregory, Jones, Wendell D, Campagne, Fabien, Wen, Zhining, Walker, Stephen J, Su, Zhenqiang, Chu, Tzu-Ming, Goodsaid, Federico M, Pusztai, Lajos, Shaughnessy, Jr, John D, Oberthuer, André, Thomas, Russell S, Paules, Richard S, Fielden, Mark, Barlogie, Bart, Chen, Weijie, Du, Pan, Fischer, Matthias, Furlanello, Cesare, Gallas, Brandon D, Ge, Xijin, Megherbi, Dalila B, Symmans, W Fraser, Wang, May D, Zhang, John, Bitter, Hans, Brors, Benedikt, Bushel, Pierre R, Bylesjo, Max, Chen, Minjun, Cheng, Jie, Cheng, Jing, Chou, Jeff, Davison, Timothy S, Delorenzi, Mauro, Deng, Youping, Devanarayan, Viswanath, Dix, David J, Dopazo, Joaquin, Dorff, Kevin C, Elloumi, Fathi, Fan, Jianqing, Fan, Shicai, Fan, Xiaohui, Fang, Hong, Gonzaludo, Nina, Hess, Kenneth R, Hong, Huixiao, Huan, Jun, Irizarry, Rafael A, Judson, Richard, Juraeva, Dilafruz, Lababidi, Samir, Lambert, Christophe G, Li, Li, Li, Yanen, Li, Zhen, Lin, Simon M, Liu, Guozhen, Lobenhofer, Edward K, Luo, Jun, Luo, Wen, McCall, Matthew N, Nikolsky, Yuri, Pennello, Gene A, Perkins, Roger G, Philip, Reena, Popovici, Vlad, Price, Nathan D, Qian, Feng, Scherer, Andreas, Shi, Tieliu, Shi, Weiwei, Sung, Jaeyun, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Thodima, Venkata, Trygg, Johan, Vishnuvajjala, Lakshmi, Wang, Sue Jane, Wu, Jianping, Wu, Yichao, Xie, Qian, Yousef, Waleed A, Zhang, Liang, Zhang, Xuegong, Zhong, Sheng, Zhou, Yiming, Zhu, Sheng, Arasappan, Dhivya, Bao, Wenjun, Lucas, Anne Bergstrom, Berthold, Frank, Brennan, Richard J, Buness, Andreas, Catalano, Jennifer G, Chang, Chang, Chen, Rong, Cheng, Yiyu

Volltext

Novel small molecules induced ROS accumulation and antitumor activity based on an oxidative stress gene signature von Protter, Andrew Asher, Phan, Vernon, Mizuno, Traci, Kim, Kevin, Louie, Brent, Elmer, Sidney, Herman, Damir, Grahnen, Johan, Lum, Pek

Volltext

Rat toxicogenomic study reveals analytical consistency across microarray platforms von Guo, Lei, Shi, Leming, Lobenhofer, Edward K, Wang, Charles, Shippy, Richard, Harris, Stephen C, Zhang, Lu, Mei, Nan, Chen, Tao, Herman, Damir, Goodsaid, Federico M, Hurban, Patrick, Phillips, Kenneth L, Xu, Jun, Deng, Xutao, Sun, Yongming Andrew, Tong, Weida, Dragan, Yvonne P

Volltext

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements von Shi, Leming, Reid, Laura H, Jones, Wendell D, Shippy, Richard, Warrington, Janet A, Baker, Shawn C, Collins, Patrick J, de Longueville, Francoise, Kawasaki, Ernest S, Lee, Kathleen Y, Luo, Yuling, Sun, Yongming Andrew, Willey, James C, Setterquist, Robert A, Fischer, Gavin M, Tong, Weida, Dragan, Yvonne P, Dix, David J, Frueh, Felix W, Goodsaid, Frederico M, Herman, Damir, Jensen, Roderick V, Johnson, Charles D, Lobenhofer, Edward K, Puri, Raj K, Schrf, Uwe, Thierry-Mieg, Jean, Wang, Charles, Wilson, Mike, Wolber, Paul K, Zhang, Lu, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Lucas, Anne Bergstrom, Bertholet, Vincent, Boysen, Cecilie, Bromley, Bud, Brown, Donna, Brunner, Alan, Canales, Roger, Cao, Xiaoxi Megan, Cebula, Thomas A, Chen, James J, Cheng, Jing, Chu, Tzu-Ming, Chudin, Eugene, Corson, John, Corton, J Christopher, Croner, Lisa J, Davies, Christopher, Davison, Timothy S, Delenstarr, Glenda, Deng, Xutao, Dorris, David, Eklund, Aron C, Fan, Xiao-hui, Fang, Hong, Fulmer-Smentek, Stephanie, Fuscoe, James C, Gallagher, Kathryn, Ge, Weigong, Guo, Lei, Guo, Xu, Hager, Janet, Haje, Paul K, Han, Jing, Han, Tao, Harbottle, Heather C, Harris, Stephen C, Hatchwell, Eli, Hauser, Craig A, Hester, Susan, Hong, Huixiao, Hurban, Patrick, Jackson, Scott A, Ji, Hanlee, Knight, Charles R, Kuo, Winston P, LeClerc, J Eugene, Levy, Shawn, Li, Quan-Zhen, Liu, Chunmei, Liu, Ying, Lombardi, Michael J, Ma, Yunqing, Magnuson, Scott R, Maqsodi, Botoul, McDaniel, Tim, Mei, Nan, Myklebost, Ola, Ning, Baitang, Novoradovskaya, Natalia, Orr, Michael S, Osborn, Terry W, Papallo, Adam, Patterson, Tucker A, Perkins, Roger G, Peters, Elizabeth H, Peterson, Ron

Volltext

Non-invasive analysis of intestinal development in preterm and term infants using RNA-Sequencing von Knight, Jason M., Davidson, Laurie A., Herman, Damir, Martin, Camilia R., Goldsby, Jennifer S., Ivanov, Ivan V., Donovan, Sharon M., Chapkin, Robert S.

Volltext

CHST11 gene expression and DNA methylation in breast cancer von HERMAN, DAMIR, LEAKEY, TATIANA I, BEHRENS, ALICE, YAO-BORENGASSER, AIWEI, COONEY, CRAIG A, JOUSHEGHANY, FARIBA, PHANAVANH, BOUNLEUT, SIEGEL, ERIC R, SAFAR, A. MAZIN, KOROURIAN, SOHEILA, KIEBER-EMMONS, THOMAS, MONZAVI-KARBASSI, BEHJATOLAH

Volltext

Conserved abundance and topological features in chromatin-remodeling protein interaction networks von Sardiu, Mihaela E, Gilmore, Joshua M, Groppe, Brad D, Herman, Damir, Ramisetty, Sreenivasa R, Cai, Yong, Jin, Jingji, Conaway, Ronald C, Conaway, Joan W, Florens, Laurence, Washburn, Michael P

Volltext

Abstract 4018: DNA methylation controls CHST11 gene expression in breast cancer von Herman, Damir, Leakey, Tatiana I., Jousheghany, Fariba, yao-Borengasser, Aiwei, Cooney, Craig A., Kieber-Emmons, Thomas, Monzavi-Karbassi, Behjatolah

Volltext

Non-invasive analysis of intestinal development in preterm and term infants using RNA-Sequencing von Knight, Jason M, Davidson, Laurie A, Herman, Damir, Martin, Camilia R, Goldsby, Jennifer S, Ivanov, Ivan V, Donovan, Sharon M, Chapkin, Robert S

Volltext

Level spacings in random matrix theory and Coulomb blockade peaks in quantum dots von Herman, Damir, Ong, T. Tzen, Usaj, Gonzalo, Mathur, Harsh, Baranger, Harold U.

Volltext

Myeloma Cell Interaction with Mesenchymal Stem Cells: Heterogeneity of Myeloma Cell Survival and Gene Expression Studies von Entin, Igor, Herman, Damir, Williams, David R., Freeman, John, Shaughnessy, John D, Barlogie, Bart, Epstein, Joshua

Volltext

Myeloma and Osteolytic Bone Disease: Is DKK1 All It Takes? von Chen, Bangzheng, Wu, Hong, Zeng, Yuxin, Freeman, John E, Herman, Damir, Shaughnessy, John D., Barlogie, Bart, Epstein, Joshua

Volltext

The Reproducibility of Lists of Differentially Expressed Genes in Microarray Studies von Shi, Leming, Jones, Wendell, Jensen, Roderick, Harris, Stephen, Perkins, Roger, Goodsaid, Federico, Guo, Lei, Croner, Lisa, Boysen, Cecilie, Fang, Hong, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick, Fan, Xiao-hui, Frueh, Felix, Fuscoe, James, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron, Puri, Raj, Qian, Feng, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue-Jane, Warrington, Janet, Willey, James, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Chen, James, Wolfinger, Russell, Tong, Weida

Volltext

Solvable regime of disorder and interactions in ballistic nanostructures: Consequences for Coulomb blockade von Murthy, Ganpathy, Shankar, R., Herman, Damir, Mathur, Harsh

Volltext

Integration of DNA Copy Number and Gene Expression Alterations Reveal Novel Insights into the Molecular Pathogenesis and Prognosis of Multiple Myeloma von Zhou, Yiming, Barlogie, Bart, Herman, Damir, Stephens, Owen, Tian, Erming, Williams, David, Cartron, Marie-astrid, van Rhee, Frits, Pineda-Roman, Mauricio, Alsayed, Yazan, Anaissie, Elias, Sawyer, Jeffrey, Shaughnessy, John D.

Volltext

Changes in the Expression of Proteasome Genes in Tumor Cells Following Short-Term Proteasome Inhibitor Therapy Predicts Survival in Multiple Myeloma Treated with Bortezomib-Contain... von Shaughnessy, John D., Qu, Pingping, Edmondson, Ricky, Herman, Damir, Zhou, Yiming, Tian, Erming, van Rhee, Frits, Pineda-Roman, Mauricio, Alsayed, Yazan, Anaissie, Elias, Qiang, Ya-wei, Epstein, Joshua, Yaccoby, Shmuel, Williams, David, Zhan, Fenghuang, Stephens, Owen, Hoering, Antje, Crowley, John, Barlogie, Bart

Volltext