An Advanced Strategy for Comprehensive Profiling of ADP-ribosylation Sites Using Mass Spectrometry-based Proteomics von Hendriks, Ivo A., Larsen, Sara C., Nielsen, Michael L.

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Site-specific characterization of endogenous SUMOylation across species and organs von Hendriks, Ivo A., Lyon, David, Su, Dan, Skotte, Niels H., Daniel, Jeremy A., Jensen, Lars J., Nielsen, Michael L.

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Uncovering global SUMOylation signaling networks in a site-specific manner von Hendriks, Ivo A, D'Souza, Rochelle C J, Yang, Bing, Verlaan-de Vries, Matty, Mann, Matthias, Vertegaal, Alfred C O

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Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation von Hendriks, Ivo A, Lyon, David, Young, Clifford, Jensen, Lars J, Vertegaal, Alfred C O, Nielsen, Michael L

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Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells von Theurillat, Ilan, Hendriks, Ivo A., Cossec, Jack-Christophe, Andrieux, Alexandra, Nielsen, Michael L., Dejean, Anne

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Uncovering SUMOylation Dynamics during Cell-Cycle Progression Reveals FoxM1 as a Key Mitotic SUMO Target Protein von Schimmel, Joost, Eifler, Karolin, Sigurðsson, Jón Otti, Cuijpers, Sabine A.G., Hendriks, Ivo A., Verlaan-de Vries, Matty, Kelstrup, Christian D., Francavilla, Chiara, Medema, René H., Olsen, Jesper V., Vertegaal, Alfred C.O.

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Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation von Larsen, Sara C., Hendriks, Ivo A., Lyon, David, Jensen, Lars J., Nielsen, Michael L.

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The regulatory landscape of the human HPF1- and ARH3-dependent ADP-ribosylome von Hendriks, Ivo A., Buch-Larsen, Sara C., Prokhorova, Evgeniia, Elsborg, Jonas D., Rebak, Alexandra K.L.F.S., Zhu, Kang, Ahel, Dragana, Lukas, Claudia, Ahel, Ivan, Nielsen, Michael L.

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Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation von Buch-Larsen, Sara C., Hendriks, Ivo A., Lodge, Jean M., Rykær, Martin, Furtwängler, Benjamin, Shishkova, Evgenia, Westphall, Michael S., Coon, Joshua J., Nielsen, Michael L.

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SUMO-2 Orchestrates Chromatin Modifiers in Response to DNA Damage von Hendriks, Ivo A., Treffers, Louise W., Verlaan-de Vries, Matty, Olsen, Jesper V., Vertegaal, Alfred C.O.

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SUMOylation promotes protective responses to DNA‐protein crosslinks von Borgermann, Nikoline, Ackermann, Leena, Schwertman, Petra, Hendriks, Ivo A, Thijssen, Karen, Liu, Julio CY, Lans, Hannes, Nielsen, Michael L, Mailand, Niels

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MaxQuant.Live Enables Enhanced Selectivity and Identification of Peptides Modified by Endogenous SUMO and Ubiquitin von Hendriks, Ivo A, Akimov, Vyacheslav, Blagoev, Blagoy, Nielsen, Michael L

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Site-Specific Identification of SUMO-2 Targets in Cells Reveals an Inverted SUMOylation Motif and a Hydrophobic Cluster SUMOylation Motif von Matic, Ivan, Schimmel, Joost, Hendriks, Ivo A., van Santen, Maria A., van de Rijke, Frans, van Dam, Hans, Gnad, Florian, Mann, Matthias, Vertegaal, Alfred C.O.

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Transient suppression of SUMOylation in embryonic stem cells generates embryo-like structures von Cossec, Jack-Christophe, Traboulsi, Tatiana, Sart, Sébastien, Loe-Mie, Yann, Guthmann, Manuel, Hendriks, Ivo A., Theurillat, Ilan, Nielsen, Michael L., Torres-Padilla, Maria-Elena, Baroud, Charles N., Dejean, Anne

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Multisite SUMOylation restrains DNA polymerase η interactions with DNA damage sites von Guérillon, Claire, Smedegaard, Stine, Hendriks, Ivo A., Nielsen, Michael L., Mailand, Niels

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DAXX adds a de novo H3.3K9me3 deposition pathway to the histone chaperone network von Carraro, Massimo, Hendriks, Ivo A., Hammond, Colin M., Solis-Mezarino, Victor, Völker-Albert, Moritz, Elsborg, Jonas D., Weisser, Melanie B., Spanos, Christos, Montoya, Guillermo, Rappsilber, Juri, Imhof, Axel, Nielsen, Michael L., Groth, Anja

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Waves of sumoylation support transcription dynamics during adipocyte differentiation von Zhao, Xu, Hendriks, Ivo A, Le Gras, Stéphanie, Ye, Tao, Ramos-Alonso, Lucía, Nguéa P, Aurélie, Lien, Guro Flor, Ghasemi, Fatemeh, Klungland, Arne, Jost, Bernard, Enserink, Jorrit M, Nielsen, Michael L, Chymkowitch, Pierre

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System-wide identification of wild-type SUMO-2 conjugation sites von Hendriks, Ivo A., D’Souza, Rochelle C., Chang, Jer-Gung, Mann, Matthias, Vertegaal, Alfred C. O.

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Mechanism and function of DNA replication‐independent DNA‐protein crosslink repair via the SUMO‐RNF4 pathway von Liu, Julio C Y, Kühbacher, Ulrike, Larsen, Nicolai B, Borgermann, Nikoline, Garvanska, Dimitriya H, Hendriks, Ivo A, Ackermann, Leena, Haahr, Peter, Gallina, Irene, Guérillon, Claire, Branigan, Emma, Hay, Ronald T, Azuma, Yoshiaki, Nielsen, Michael Lund, Duxin, Julien P, Mailand, Niels

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The ubiquitin ligase RFWD3 is required for translesion DNA synthesis von Gallina, Irene, Hendriks, Ivo A., Hoffmann, Saskia, Larsen, Nicolai B., Johansen, Joachim, Colding-Christensen, Camilla S., Schubert, Lisa, Sellés-Baiget, Selene, Fábián, Zita, Kühbacher, Ulrike, Gao, Alan O., Räschle, Markus, Rasmussen, Simon, Nielsen, Michael L., Mailand, Niels, Duxin, Julien P.

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