Pre-training with a rational approach for antibody sequence representation von Gao, Xiangrui, Cao, Changling, He, Chenfeng, Lai, Lipeng

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DNA damage repair functions and targeted treatment in breast cancer von He, Chenfeng, Kawaguchi, Kosuke, Toi, Masakazu

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Cytochrome P450 F3 promotes colorectal cancer via inhibiting NRF2-mediated ferroptosis von Xu, Ziyang, Xu, Cheng, Lu, Jie, He, Chenfeng, Wang, Xinyue, Zhu, Dongfei, Wang, Aizhong, Zhang, Zhengyun, Jiang, Can

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Bringing machine learning to research on intellectual and developmental disabilities: taking inspiration from neurological diseases von Gupta, Chirag, Chandrashekar, Pramod, Jin, Ting, He, Chenfeng, Khullar, Saniya, Chang, Qiang, Wang, Daifeng

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Cellular senescence triggers intracellular acidification and lysosomal pH alkalinized via ATP6AP2 attenuation in breast cancer cells von Li, Wei, Kawaguchi, Kosuke, Tanaka, Sunao, He, Chenfeng, Maeshima, Yurina, Suzuki, Eiji, Toi, Masakazu

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DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype-phenotype prediction von Chandrashekar, Pramod Bharadwaj, Alatkar, Sayali, Wang, Jiebiao, Hoffman, Gabriel E, He, Chenfeng, Jin, Ting, Khullar, Saniya, Bendl, Jaroslav, Fullard, John F, Roussos, Panos, Wang, Daifeng

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Surface orientation of hydrophilic groups in sulfonated poly(ether ether ketone) membranes von He, Chenfeng, Guiver, Michael D., Mighri, Frej, Kaliaguine, Serge

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Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children von Wendel, Ben S., He, Chenfeng, Qu, Mingjuan, Wu, Di, Hernandez, Stefany M., Ma, Ke-Yue, Liu, Eugene W., Xiao, Jun, Crompton, Peter D., Pierce, Susan K., Ren, Pengyu, Chen, Keke, Jiang, Ning

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Immune Repertoire Sequencing Using Molecular Identifiers Enables Accurate Clonality Discovery and Clone Size Quantification von Ma, Ke-Yue, He, Chenfeng, Wendel, Ben S, Williams, Chad M, Xiao, Jun, Yang, Hui, Jiang, Ning

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Serum amyloid alpha 1-2 are not required for liver inflammation in the 4T1 murine breast cancer model von He, Chenfeng, Konishi, Riyo, Harata, Ayano, Nakamura, Yuki, Mizuno, Rin, Yoda, Mayuko, Toi, Masakazu, Kawaguchi, Kosuke, Kawaoka, Shinpei

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Mapping the Lineage Relationship between CXCR5+ and CXCR5− CD4+ T Cells in HIV-Infected Human Lymph Nodes von Del Alcazar, Daniel, Wang, Yifeng, He, Chenfeng, Wendel, Ben S., Del Río-Estrada, Perla M., Lin, Jerome, Ablanedo-Terrazas, Yuria, Malone, Michael J., Hernandez, Stefany M., Frank, Ian, Naji, Ali, Reyes-Terán, Gustavo, Jiang, Ning, Su, Laura F.

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Transcriptome and TCR Repertoire Measurements of CXCR3 + T Follicular Helper Cells Within HIV-Infected Human Lymph Nodes von He, Chenfeng, Malone, Michael J, Wendel, Ben S, Ma, Ke-Yue, Del Alcazar, Daniel, Weiner, David B, De Jager, Philip L, Del Río-Estrada, Perla M, Ablanedo-Terrazas, Yuria, Reyes-Terán, Gustavo, Su, Laura F, Jiang, Ning

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BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids von He, Chenfeng, Kalafut, Noah Cohen, Sandoval, Soraya O., Risgaard, Ryan, Sirois, Carissa L., Yang, Chen, Khullar, Saniya, Suzuki, Marin, Huang, Xiang, Chang, Qiang, Zhao, Xinyu, Sousa, Andre M.M., Wang, Daifeng

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Lineage Tracking the Generation of T Regulatory Cells From Microbial Activated T Effector Cells in Naïve Mice von Zhu, Kun, He, Chenfeng, Liu, Si-Qi, Qu, Mingjuan, Xie, Tao, Yang, Xiaofeng, Lei, Lei, Zhou, Xiaobo, Shi, Lin, Zhang, Dan, Cheng, Yanbin, Sun, Yae, Zheng, Huiqiang, Shen, Xiaonan, Li, Qijing, Jiang, Ning, Zhang, Baojun

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Normalized Synergy Predicts That CD8 Co-Receptor Contribution to T Cell Receptor (TCR) and pMHC Binding Decreases As TCR Affinity Increases in Human Viral-Specific T Cells von Williams, Chad M, Schonnesen, Alexandra A, Zhang, Shu-Qi, Ma, Ke-Yue, He, Chenfeng, Yamamoto, Tori, Eckhardt, S Gail, Klebanoff, Christopher A, Jiang, Ning

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A Streamlined Approach to Antibody Novel Germline Allele Prediction and Validation von Wendel, Ben S, He, Chenfeng, Crompton, Peter D, Pierce, Susan K, Jiang, Ning

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Murine breast cancers disorganize the liver transcriptome in a zonated manner von Vandenbon, Alexis, Mizuno, Rin, Konishi, Riyo, Onishi, Masaya, Masuda, Kyoko, Kobayashi, Yuka, Kawamoto, Hiroshi, Suzuki, Ayako, He, Chenfeng, Nakamura, Yuki, Kawaguchi, Kosuke, Toi, Masakazu, Shimizu, Masahito, Tanaka, Yasuhito, Suzuki, Yutaka, Kawaoka, Shinpei

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MiRmat: mature microRNA sequence prediction von He, Chenfeng, Li, Ying-Xin, Zhang, Guangxin, Gu, Zuguang, Yang, Rong, Li, Jie, Lu, Zhi John, Zhou, Zhi-Hua, Zhang, Chenyu, Wang, Jin

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High-throughput determination of the antigen specificities of T cell receptors in single cells von Zhang, Shu-Qi, Ma, Ke-Yue, Schonnesen, Alexandra A, Zhang, Mingliang, He, Chenfeng, Sun, Eric, Williams, Chad M, Jia, Weiping, Jiang, Ning

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Shifting employment and perceptions of household responsibilities during early stages of the COVID-19 pandemic in Nevada, USA von Coughenour, Courtney, Chien, Lung-Chang, Labus, Brian, Gakh, Maxim, Usufzy, Pashtana

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