Unified tumor growth mechanisms from multimodel inference and dataset integration von Beik, Samantha P, Harris, Leonard A, Kochen, Michael A, Sage, Julien, Quaranta, Vito, Lopez, Carlos F

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BioNetGen 2.2: advances in rule-based modeling von Harris, Leonard A, Hogg, Justin S, Tapia, José-Juan, Sekar, John A P, Gupta, Sanjana, Korsunsky, Ilya, Arora, Arshi, Barua, Dipak, Sheehan, Robert P, Faeder, James R

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Increase in the Tight Junction Protein Claudin-1 in Intestinal Inflammation von Poritz, Lisa S., Harris, Leonard R., Kelly, Ashley A., Koltun, Walter A.

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An in vitro model of tumor heterogeneity resolves genetic, epigenetic, and stochastic sources of cell state variability von Hayford, Corey E, Tyson, Darren R, Robbins, 3rd, C Jack, Frick, Peter L, Quaranta, Vito, Harris, Leonard A

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An unbiased metric of antiproliferative drug effect in vitro von Harris, Leonard A, Frick, Peter L, Garbett, Shawn P, Hardeman, Keisha N, Paudel, B Bishal, Lopez, Carlos F, Quaranta, Vito, Tyson, Darren R

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Unsupervised logic-based mechanism inference for network-driven biological processes von Prugger, Martina, Einkemmer, Lukas, Beik, Samantha P, Wasdin, Perry T, Harris, Leonard A, Lopez, Carlos F

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Identification of a rare LAMB4 variant associated with familial diverticulitis through exome sequencing von Coble, Joel L, Sheldon, Kathryn E, Yue, Feng, Salameh, Tarik J, Harris, III, Leonard R, Deiling, Sue, Ruggiero, Francesca M, Eshelman, Melanie A, Yochum, Gregory S, Koltun, Walter A, Gerhard, Glenn S, Broach, James R

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Can a Pragmatist Recite a Preface to a Twenty Volume Suicide Note? Or Insurrectionist Challenges to Pragmatism—Walker, Child, and Locke von Harris, Leonard

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A drift-diffusion checkpoint model predicts a highly variable and growth-factor-sensitive portion of the cell cycle G1 phase von Jones, Zack W, Leander, Rachel, Quaranta, Vito, Harris, Leonard A, Tyson, Darren R

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Real-time luminescence enables continuous drug-response analysis in adherent and suspension cell lines von Wandishin, Clayton M., Robbins, Charles John, Tyson, Darren R., Harris, Leonard A., Quaranta, Vito

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Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective von Chifman, Julia, Arat, Seda, Deng, Zhiyong, Lemler, Erica, Pino, James C, Harris, Leonard A, Kochen, Michael A, Lopez, Carlos F, Akman, Steven A, Torti, Frank M, Torti, Suzy V, Laubenbacher, Reinhard

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A biochemical necroptosis model explains cell-type-specific responses to cell death cues von Ildefonso, Geena V., Oliver Metzig, Marie, Hoffmann, Alexander, Harris, Leonard A., Lopez, Carlos F.

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Quantifying Drug Combination Synergy along Potency and Efficacy Axes von Meyer, Christian T., Wooten, David J., Paudel, B. Bishal, Bauer, Joshua, Hardeman, Keisha N., Westover, David, Lovly, Christine M., Harris, Leonard A., Tyson, Darren R., Quaranta, Vito

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Concepts of multi-level dynamical modelling: understanding mechanisms of squamous cell carcinoma development in Fanconi anemia von Velleuer, Eunike, Domínguez-Hüttinger, Elisa, Rodríguez, Alfredo, Harris, Leonard A, Carlberg, Carsten

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Exact hybrid particle/population simulation of rule-based models of biochemical systems von Hogg, Justin S, Harris, Leonard A, Stover, Lori J, Nair, Niketh S, Faeder, James R

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Novel Therapies for Relapsed or Refractory Diffuse Large B-Cell Lymphoma von Harris, Leonard Jeff, Patel, Kruti, Martin, Michael

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The Microbial Ecosystem Distinguishes Chronically Diseased Tissue from Adjacent Tissue in the Sigmoid Colon of Chronic, Recurrent Diverticulitis Patients von Schieffer, Kathleen M., Sabey, Kate, Wright, Justin R., Toole, David R., Drucker, Rebecca, Tokarev, Vasily, Harris, Leonard R., Deiling, Sue, Eshelman, Melanie A., Hegarty, John P., Yochum, Gregory S., Koltun, Walter A., Lamendella, Regina, Stewart, David B.

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Proton pump inhibitors induce changes in colonocyte gene expression that may affect Clostridium difficile infection von Hegarty, John P., PhD, Sangster, William, MD, Harris, Leonard R., BSc, Stewart, David B., MD

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A Nonquiescent “Idling” Population State in Drug-Treated, BRAF-Mutated Melanoma von Paudel, B. Bishal, Harris, Leonard A., Hardeman, Keisha N., Abugable, Arwa A., Hayford, Corey E., Tyson, Darren R., Quaranta, Vito

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Thunor: visualization and analysis of high-throughput dose–response datasets von Lubbock, Alexander L R, Harris, Leonard A, Quaranta, Vito, Tyson, Darren R, Lopez, Carlos F

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