Genome sequencing highlights the dynamic early history of dogs von Freedman, Adam H, Gronau, Ilan, Schweizer, Rena M, Ortega-Del Vecchyo, Diego, Han, Eunjung, Silva, Pedro M, Galaverni, Marco, Fan, Zhenxin, Marx, Peter, Lorente-Galdos, Belen, Beale, Holly, Ramirez, Oscar, Hormozdiari, Farhad, Alkan, Can, Vilà, Carles, Squire, Kevin, Geffen, Eli, Kusak, Josip, Boyko, Adam R, Parker, Heidi G, Lee, Clarence, Tadigotla, Vasisht, Wilton, Alan, Siepel, Adam, Bustamante, Carlos D, Harkins, Timothy T, Nelson, Stanley F, Ostrander, Elaine A, Marques-Bonet, Tomas, Wayne, Robert K, Novembre, John

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Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex von Luo, Chongyuan, Keown, Christopher L., Kurihara, Laurie, Zhou, Jingtian, He, Yupeng, Li, Junhao, Castanon, Rosa, Lucero, Jacinta, Nery, Joseph R., Sandoval, Justin P., Bui, Brian, Sejnowski, Terrence J., Harkins, Timothy T., Mukamel, Eran A., Behrens, M. Margarita, Ecker, Joseph R.

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Genomic Analysis of Uterine Lavage Fluid Detects Early Endometrial Cancers and Reveals a Prevalent Landscape of Driver Mutations in Women without Histopathologic Evidence of Cancer... von Nair, Navya, Camacho-Vanegas, Olga, Rykunov, Dmitry, Dashkoff, Matthew, Camacho, Sandra Catalina, Schumacher, Cassie A, Irish, Jonathan C, Harkins, Timothy T, Freeman, Elijah, Garcia, Isaac, Pereira, Elena, Kendall, Sviatoslav, Belfer, Rachel, Kalir, Tamara, Sebra, Robert, Reva, Boris, Dottino, Peter, Martignetti, John A

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Spatial and temporal diversity in genomic instability processes defines lung cancer evolution von de Bruin, Elza C., McGranahan, Nicholas, Mitter, Richard, Salm, Max, Wedge, David C., Yates, Lucy, Jamal-Hanjani, Mariam, Shafi, Seema, Murugaesu, Nirupa, Rowan, Andrew J., Grönroos, Eva, Muhammad, Madiha A., Horswell, Stuart, Gerlinger, Marco, Varela, Ignacio, Jones, David, Marshall, John, Voet, Thierry, Van Loo, Peter, Rassl, Doris M., Rintoul, Robert C., Janes, Sam M., Lee, Siow-Ming, Forster, Martin, Ahmad, Tanya, Lawrence, David, Falzon, Mary, Capitanio, Arrigo, Harkins, Timothy T., Lee, Clarence C., Tom, Warren, Teefe, Enock, Chen, Shann-Ching, Begum, Sharmin, Rabinowitz, Adam, Phillimore, Benjamin, Spencer-Dene, Bradley, Stamp, Gordon, Szallasi, Zoltan, Matthews, Nik, Stewart, Aengus, Campbell, Peter, Swanton, Charles

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Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections von Salipante, Stephen J, Sengupta, Dhruba J, Rosenthal, Christopher, Costa, Gina, Spangler, Jessica, Sims, Elizabeth H, Jacobs, Michael A, Miller, Samuel I, Hoogestraat, Daniel R, Cookson, Brad T, McCoy, Connor, Matsen, Frederick A, Shendure, Jay, Lee, Clarence C, Harkins, Timothy T, Hoffman, Noah G

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Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling von Salipante, Stephen J, Kawashima, Toana, Rosenthal, Christopher, Hoogestraat, Daniel R, Cummings, Lisa A, Sengupta, Dhruba J, Harkins, Timothy T, Cookson, Brad T, Hoffman, Noah G

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Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.) von Cavagnaro, Pablo F, Senalik, Douglas A, Yang, Luming, Simon, Philipp W, Harkins, Timothy T, Kodira, Chinnappa D, Huang, Sanwen, Weng, Yiqun

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The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle von Suen, Garret, Teiling, Clotilde, Li, Lewyn, Holt, Carson, Abouheif, Ehab, Bornberg-Bauer, Erich, Bouffard, Pascal, Caldera, Eric J, Cash, Elizabeth, Cavanaugh, Amy, Denas, Olgert, Elhaik, Eran, Favé, Marie-Julie, Gadau, Jürgen, Gibson, Joshua D, Graur, Dan, Grubbs, Kirk J, Hagen, Darren E, Harkins, Timothy T, Helmkampf, Martin, Hu, Hao, Johnson, Brian R, Kim, Jay, Marsh, Sarah E, Moeller, Joseph A, Muñoz-Torres, Mónica C, Murphy, Marguerite C, Naughton, Meredith C, Nigam, Surabhi, Overson, Rick, Rajakumar, Rajendhran, Reese, Justin T, Scott, Jarrod J, Smith, Chris R, Tao, Shu, Tsutsui, Neil D, Viljakainen, Lumi, Wissler, Lothar, Yandell, Mark D, Zimmer, Fabian, Taylor, James, Slater, Steven C, Clifton, Sandra W, Warren, Wesley C, Elsik, Christine G, Smith, Christopher D, Weinstock, George M, Gerardo, Nicole M, Currie, Cameron R

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ERASE-Seq: Leveraging replicate measurements to enhance ultralow frequency variant detection in NGS data von Kamps-Hughes, Nick, McUsic, Andrew, Kurihara, Laurie, Harkins, Timothy T, Pal, Prithwish, Ray, Claire, Ionescu-Zanetti, Cristian

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Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome von Korbel, Jan O, Urban, Alexander Eckehart, Affourtit, Jason P, Godwin, Brian, Grubert, Fabian, Simons, Jan Fredrik, Kim, Philip M, Palejev, Dean, Carriero, Nicholas J, Du, Lei, Taillon, Bruce E, Chen, Zhoutao, Tanzer, Andrea, Saunders, A.C. Eugenia, Chi, Jianxiang, Yang, Fengtang, Carter, Nigel P, Hurles, Matthew E, Weissman, Sherman M, Harkins, Timothy T, Gerstein, Mark B, Egholm, Michael, Snyder, Michael

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Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis von Holstege, Henne, Pfeiffer, Wayne, Sie, Daoud, Hulsman, Marc, Nicholas, Thomas J, Lee, Clarence C, Ross, Tristen, Lin, Jue, Miller, Mark A, Ylstra, Bauke, Meijers-Heijboer, Hanne, Brugman, Martijn H, Staal, Frank J T, Holstege, Gert, Reinders, Marcel J T, Harkins, Timothy T, Levy, Samuel, Sistermans, Erik A

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Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs von Freedman, Adam H, Schweizer, Rena M, Ortega-Del Vecchyo, Diego, Han, Eunjung, Davis, Brian W, Gronau, Ilan, Silva, Pedro M, Galaverni, Marco, Fan, Zhenxin, Marx, Peter, Lorente-Galdos, Belen, Ramirez, Oscar, Hormozdiari, Farhad, Alkan, Can, Vilà, Carles, Squire, Kevin, Geffen, Eli, Kusak, Josip, Boyko, Adam R, Parker, Heidi G, Lee, Clarence, Tadigotla, Vasisht, Siepel, Adam, Bustamante, Carlos D, Harkins, Timothy T, Nelson, Stanley F, Marques-Bonet, Tomas, Ostrander, Elaine A, Wayne, Robert K, Novembre, John

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An insect herbivore microbiome with high plant biomass-degrading capacity von Suen, Garret, Scott, Jarrod J, Aylward, Frank O, Adams, Sandra M, Tringe, Susannah G, Pinto-Tomás, Adrián A, Foster, Clifton E, Pauly, Markus, Weimer, Paul J, Barry, Kerrie W, Goodwin, Lynne A, Bouffard, Pascal, Li, Lewyn, Osterberger, Jolene, Harkins, Timothy T, Slater, Steven C, Donohue, Timothy J, Currie, Cameron R

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26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans von Han, Ting, Manoharan, Arun Prasad, Harkins, Tim T, Bouffard, Pascal, Fitzpatrick, Colin, Chu, Diana S, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Kim, John K

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Population genomic analysis of ancient and modern genomes yields new insights into the genetic ancestry of the Tyrolean Iceman and the genetic structure of Europe von Sikora, Martin, Carpenter, Meredith L, Moreno-Estrada, Andres, Henn, Brenna M, Underhill, Peter A, Sánchez-Quinto, Federico, Zara, Ilenia, Pitzalis, Maristella, Sidore, Carlo, Busonero, Fabio, Maschio, Andrea, Angius, Andrea, Jones, Chris, Mendoza-Revilla, Javier, Nekhrizov, Georgi, Dimitrova, Diana, Theodossiev, Nikola, Harkins, Timothy T, Keller, Andreas, Maixner, Frank, Zink, Albert, Abecasis, Goncalo, Sanna, Serena, Cucca, Francesco, Bustamante, Carlos D

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Tasmanian Devil Transcriptome Reveals Schwann Cell Origins of a Clonally Transmissible Cancer von Murchison, Elizabeth P, Tovar, Cesar, Hsu, Arthur, Bender, Hannah S, Kheradpour, Pouya, Rebbeck, Clare A, Obendorf, David, Conlan, Carly, Bahlo, Melanie, Blizzard, Catherine A, Pyecroft, Stephen, Kreiss, Alexandre, Kellis, Manolis, Stark, Alexander, Harkins, Timothy T, Graves, Jennifer A. Marshall, Woods, Gregory M, Hannon, Gregory J, Papenfuss, Anthony T

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Detection of circulating tumor DNA in early- and late-stage human malignancies von Bettegowda, C, Sausen, M, Leary, RJ, Kinde, I, Wang, YX, Agrawal, N, Bartlett, BR, Wang, H, Luber, B, Alani, RM, Antonarakis, ES, Azad, NS, Bardelli, A, Brem, H, Cameron, JL, Lee, CC, Fecher, LA, Gallia, GL, Gibbs, P, Le, D, Giuntoli, RL, Goggins, M, Hogarty, MD, Holdhoff, M, Hong, SM, Jiao, YC, Juhl, HH, Kim, JJ, Siravegna, G, Laheru, DA, Lauricella, C, Lim, M, Lipson, EJ, Marie, SKN, Netto, GJ, Oliner, KS, Olivi, A, Olsson, L, Riggins, GJ, Sartore-Bianchi, A, Schmidt, K, Shih, IM, Oba-Shinjo, SM, Siena, S, Theodorescu, D, Tie, JN, Harkins, TT, Veronese, S, Wang, TL, Weingart, JD, Wolfgang, CL, Wood, LD, Xing, DM, Hruban, RH, Wu, J, Allen, PJ, Schmidt, CM, Choti, MA, Velculescu, VE, Kinzler, KW, Vogelstein, B, Papadopoulos, N, Luis, AJ

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Genomic and transcriptomic plasticity in treatment-naive ovarian cancer von Hoogstraat, Marlous, de Pagter, Mirjam S, Cirkel, Geert A, van Roosmalen, Markus J, Harkins, Timothy T, Duran, Karen, Kreeftmeijer, Jennifer, Renkens, Ivo, Witteveen, Petronella O, Lee, Clarence C, Nijman, Isaac J, Guy, Tanisha, van 't Slot, Ruben, Jonges, Trudy N, Lolkema, Martijn P, Koudijs, Marco J, Zweemer, Ronald P, Voest, Emile E, Cuppen, Edwin, Kloosterman, Wigard P

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Next-generation sequencing of human mitochondrial reference genomes uncovers high heteroplasmy frequency von Sosa, Maria Ximena, Sivakumar, I K Ashok, Maragh, Samantha, Veeramachaneni, Vamsi, Hariharan, Ramesh, Parulekar, Minothi, Fredrikson, Karin M, Harkins, Timothy T, Lin, Jeffrey, Feldman, Andrew B, Tata, Pramila, Ehret, Georg B, Chakravarti, Aravinda

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Activation of germline-specific genes is required for limb regeneration in the Mexican axolotl von Zhu, Wei, Pao, Gerald M., Satoh, Akira, Cummings, Gillian, Monaghan, James R., Harkins, Timothy T., Bryant, Susan V., Randal Voss, S., Gardiner, David M., Hunter, Tony

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