phyloXML: XML for evolutionary biology and comparative genomics von Han, Mira V, Zmasek, Christian M

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Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3 von Han, Mira V, Thomas, Gregg W C, Lugo-Martinez, Jose, Hahn, Matthew W

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Gene family evolution across 12 Drosophila genomes von Hahn, Matthew W, Han, Mira V, Han, Sang-Gook

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A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies von Van, Richard, Alvarez, Daniel, Mize, Travis, Gannavarapu, Sravani, Chintham Reddy, Lohitha, Nasoz, Fatma, Han, Mira V

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Genome sequence of the model medicinal mushroom Ganoderma lucidum von Chen, Shilin, Xu, Jiang, Liu, Chang, Zhu, Yingjie, Nelson, David R., Zhou, Shiguo, Li, Chunfang, Wang, Lizhi, Guo, Xu, Sun, Yongzhen, Luo, Hongmei, Li, Ying, Song, Jingyuan, Henrissat, Bernard, Levasseur, Anthony, Qian, Jun, Li, Jianqin, Luo, Xiang, Shi, Linchun, He, Liu, Xiang, Li, Xu, Xiaolan, Niu, Yunyun, Li, Qiushi, Han, Mira V., Yan, Haixia, Zhang, Jin, Chen, Haimei, Lv, Aiping, Wang, Zhen, Liu, Mingzhu, Schwartz, David C., Sun, Chao

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Paired-end mappability of transposable elements in the human genome von Sexton, Corinne E, Han, Mira V

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Adaptive evolution of young gene duplicates in mammals von Han, Mira V, Demuth, Jeffery P, McGrath, Casey L, Casola, Claudio, Hahn, Matthew W

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Machine learning approaches for the prediction of bone mineral density by using genomic and phenotypic data of 5130 older men von Wu, Qing, Nasoz, Fatma, Jung, Jongyun, Bhattarai, Bibek, Han, Mira V., Greenes, Robert A., Saag, Kenneth G.

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Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions von Bataller, Santiago, Davis, James A, Gu, Lingkun, Baca, Sophia, Chen, Gaelan, Majid, Azeem, Villacastin, Anne J, Barth, Dylan, Han, Mira V, Rushton, Paul J, Shen, Qingxi J

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Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements von Chung, Nicky, Jonaid, G M, Quinton, Sophia, Ross, Austin, Sexton, Corinne E, Alberto, Adrian, Clymer, Cody, Churchill, Daphnie, Navarro Leija, Omar, Han, Mira V

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The essential but enigmatic regulatory role of HERVH in pluripotency von Sexton, Corinne E., Tillett, Richard L., Han, Mira V.

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Data supporting a saturation mutagenesis assay for Tat-driven transcription with the GigaAssay von Benjamin, Ronald, Giacoletto, Christopher J., FitzHugh, Zachary T., Eames, Danielle, Buczek, Lindsay, Wu, Xiaogang, Newsome, Jacklyn, Han, Mira V., Pearson, Tony, Wei, Zhi, Banerjee, Atoshi, Brown, Lancer, Valente, Liz J., Shen, Shirley, Deng, Hong-Wen, Schiller, Martin R.

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Machine Learning Approaches for Fracture Risk Assessment: A Comparative Analysis of Genomic and Phenotypic Data in 5130 Older Men von Wu, Qing, Nasoz, Fatma, Jung, Jongyun, Bhattarai, Bibek, Han, Mira V.

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Correction to: Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements von Chung, Nicky, Jonaid, G M, Quinton, Sophia, Ross, Austin, Sexton, Corinne E, Alberto, Adrian, Clymer, Cody, Churchill, Daphnie, Navarro Leija, Omar, Han, Mira V

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Genome-Wide Analysis of Starvation-Selected Drosophila melanogaster—A Genetic Model of Obesity von Hardy, Christopher M, Burke, Molly K, Everett, Logan J, Han, Mira V, Lantz, Kathryn M, Gibbs, Allen G

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GigaAssay – An adaptable high-throughput saturation mutagenesis assay platform von Benjamin, Ronald, Giacoletto, Christopher J., FitzHugh, Zachary T., Eames, Danielle, Buczek, Lindsay, Wu, Xiaogang, Newsome, Jacklyn, Han, Mira V., Pearson, Tony, Wei, Zhi, Banerjee, Atoshi, Brown, Lancer, Valente, Liz J., Shen, Shirley, Deng, Hong-Wen, Schiller, Martin R.

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Characterizing gene movements between chromosomes in Drosophila von Han, Mira V.

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Can Designer Indels Be Tailored by Gene Editing?: Can Indels Be Customized? von Trimidal, Sara G, Benjamin, Ronald, Bae, Ji Eun, Han, Mira V, Kong, Elizabeth, Singer, Aaron, Williams, Tyler S, Yang, Bing, Schiller, Martin R

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Genome wide clustering on integrated chromatin states and Micro-C contacts reveals chromatin interaction signatures von Sexton, Corinne E, Victor Paul, Sylvia, Barth, Dylan, Han, Mira V

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Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures von Stark, A, Lin, M.F, Kheradpour, P, Pedersen, J.S, Parts, L, Carlson, J.W, Crosby, M.A, Rasmussen, M.D, Roy, S, Deoras, A.N

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