Single-cell analysis of HIV-1 transcriptional activity reveals expression of proviruses in expanded clones during ART von Wiegand, Ann, Spindler, Jonathan, Hong, Feiyu F., Shao, Wei, Cyktor, Joshua C., Cillo, Anthony R., Halvas, Elias K., Coffin, John M., Mellors, John W., Kearney, Mary F.

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HIV-1 in lymph nodes is maintained by cellular proliferation during antiretroviral therapy von McManus, William R, Bale, Michael J, Spindler, Jonathan, Wiegand, Ann, Musick, Andrew, Patro, Sean C, Sobolewski, Michele D, Musick, Victoria K, Anderson, Elizabeth M, Cyktor, Joshua C, Halvas, Elias K, Shao, Wei, Wells, Daria, Wu, Xiaolin, Keele, Brandon F, Milush, Jeffrey M, Hoh, Rebecca, Mellors, John W, Hughes, Stephen H, Deeks, Steven G, Coffin, John M, Kearney, Mary F

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Persistent HIV-1 Viremia on Antiretroviral Therapy: Measurement and Mechanisms von Jacobs, Jana L., Halvas, Elias K., Tosiano, Melissa A., Mellors, John W.

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Ex vivo activation of CD4+ T-cells from donors on suppressive ART can lead to sustained production of infectious HIV-1 from a subset of infected cells von Bui, John K, Halvas, Elias K, Fyne, Elizabeth, Sobolewski, Michele D, Koontz, Dianna, Shao, Wei, Luke, Brian, Hong, Feiyu F, Kearney, Mary F, Mellors, John W

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HIV infected CD4+ T cell clones are more stable than uninfected clones during long-term antiretroviral therapy von Guo, Shuang, Luke, Brian T, Henry, Amy R, Darko, Samuel, Brandt, Leah D, Su, Ling, Sun, David, Wells, Daria, Joseph, Kevin W, Demirov, Dimiter, Halvas, Elias K, Douek, Daniel C, Wu, Xiaolin, Mellors, John W, Hughes, Stephen H

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Multiple, Linked Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Treatment-Experienced Patients Are Missed by Standard Genotype Analysis von PALMER, Sarah, KEARNEY, Mary, METCALF, Julia A, HAMMER, Scott, MELLORS, John W, COFFIN, John M, MALDARELLI, Frank, HALVAS, Elias K, BIXBY, Christian J, BAZMI, Holly, ROCK, Diane, FALLOON, Judith, DAVEY, Richard T, DEWAR, Robin L

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Low Frequency Nonnucleoside Reverse-Transcriptase Inhibitor—Resistant Variants Contribute to Failure of Efavirenz-Containing Regimens in Treatment-Experienced Patients von Halvas, Elias K., Wiegand, Ann, Boltz, Valerie F., Kearney, Mary, Nissley, Dwight, Wantman, Michael, Hammer, Scott M., Palmer, Sarah, Vaida, Florin, Coffin, John M., Mellors, John W.

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Early Emergence and Long-Term Persistence of HIV-Infected T-Cell Clones in Children von Bale, Michael J., Katusiime, Mary Grace, Wells, Daria, Wu, Xiaolin, Spindler, Jonathan, Halvas, Elias K., Cyktor, Joshua C., Wiegand, Ann, Shao, Wei, Cotton, Mark F., Hughes, Stephen H., Mellors, John W., Coffin, John M., Van Zyl, Gert U., Kearney, Mary F.

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Tracking HIV-1-Infected Cell Clones Using Integration Site-Specific qPCR von Brandt, Leah D., Guo, Shuang, Joseph, Kevin W., Jacobs, Jana L., Naqvi, Asma, Coffin, John M., Kearney, Mary F., Halvas, Elias K., Wu, Xiaolin, Hughes, Stephen H., Mellors, John W.

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Role of low-frequency HIV-1 variants in failure of nevirapine-containing antiviral therapy in women previously exposed to single-dose nevirapine von Boltz, Valerie F, Zheng, Yu, Lockman, Shahin, Hong, Feiyu, Halvas, Elias K, McIntyre, James, Currier, Judith S, Chibowa, Margret C, Kanyama, Cecelia, Nair, Apsara, Owino-Ong'or, Willis, Hughes, Michael, Coffin, John M, Mellors, John W

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HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus von Halvas, Elias K., Joseph, Kevin W., Brandt, Leah D., Guo, Shuang, Sobolewski, Michele D., Jacobs, Jana L., Tumiotto, Camille, Bui, John K., Cyktor, Joshua C., Keele, Brandon F., Morse, Gene D., Bale, Michael J., Shao, Wei, Kearney, Mary F., Coffin, John M., Rausch, Jason W., Wu, Xiaolin, Hughes, Stephen H., Mellors, John W.

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Blinded, Multicenter Comparison of Methods To Detect a Drug-Resistant Mutant of Human Immunodeficiency Virus Type 1 at Low Frequency von Halvas, Elias K, Aldrovandi, Grace M, Balfe, Peter, Beck, Ingrid A, Boltz, Valerie F, Coffin, John M, Frenkel, Lisa M, Hazelwood, J. Darren, Johnson, Victoria A, Kearney, Mary, Kovacs, Andrea, Kuritzkes, Daniel R, Metzner, Karin J, Nissley, Dwight V, Nowicki, Marek, Palmer, Sarah, Ziermann, Rainer, Zhao, Richard Y, Jennings, Cheryl L, Bremer, James, Brambilla, Don, Mellors, John W

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Clonally expanded CD4⁺ T cells can produce infectious HIV-1 in vivo von Simonetti, Francesco R., Sobolewski, Michele D., Fyne, Elizabeth, Shao, Wei, Spindler, Jonathan, Hattori, Junko, Anderson, Elizabeth M., Watters, Sarah A., Hill, Shawn, Wu, Xiaolin, Wells, David, Su, Li, Luke, Brian T., Halvas, Elias K., Besson, Guillaume, Penrose, Kerri J., Yang, Zhiming, Kwan, Richard W., Van Waes, Carter, Uldrick, Thomas, Citrin, Deborah E., Kovacs, Joseph, Polis, Michael A., Rehm, Catherine A., Gorelick, Robert, Piatak, Michael, Keele, Brandon F., Kearney, Mary F., Coffin, John M., Hughes, Stephen H., Mellors, John W., Maldarelli, Frank

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Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors von Patro, Sean C., Brandt, Leah D., Bale, Michael J., Halvas, Elias K., Joseph, Kevin W., Shao, Wei, Wu, Xiaolin, Guo, Shuang, Murrell, Ben, Wiegand, Ann, Spindler, Jonathan, Raley, Castle, Hautman, Christopher, Sobolewski, Michele, Fennessey, Christine M., Hu, Wei-Shau, Luke, Brian, Hasson, Jenna M., Niyongabo, Aurelie, Capoferri, Adam A., Keele, Brandon F., Milush, Jeff, Hoh, Rebecca, Deeks, Steven G., Maldarelli, Frank, Hughes, Stephen H., Coffin, John M., Rausch, Jason W., Mellors, John W., Kearney, Mary F.

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No evidence of HIV replication in children on antiretroviral therapy von Van Zyl, Gert U, Katusiime, Mary Grace, Wiegand, Ann, McManus, William R, Bale, Michael J, Halvas, Elias K, Luke, Brian, Boltz, Valerie F, Spindler, Jonathan, Laughton, Barbara, Engelbrecht, Susan, Coffin, John M, Cotton, Mark F, Shao, Wei, Mellors, John W, Kearney, Mary F

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HIV RNA Screening Reduces Integrase Strand Transfer Inhibitor Resistance Risk in Persons Receiving Long-Acting Cabotegravir for HIV Prevention von Eshleman, Susan H, Fogel, Jessica M, Halvas, Elias K, Piwowar-Manning, Estelle, Marzinke, Mark A, Kofron, Ryan, Wang, Zhe, Mellors, John, McCauley, Marybeth, Rinehart, Alex R, St Clair, Marty, Adeyeye, Adeola, Hinojosa, Juan C, Cabello, Robinson, Middelkoop, Keren, Hanscom, Brett, Cohen, Myron S, Grinsztejn, Beatriz, Landovitz, Raphael J

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Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats von Joseph, Kevin W, Halvas, Elias K, Brandt, Leah D, Patro, Sean C, Rausch, Jason W, Chopra, Abha, Mallal, Simon, Kearney, Mary F, Coffin, John M, Mellors, John W

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Intact HIV Proviruses Persist in Children Seven to Nine Years after Initiation of Antiretroviral Therapy in the First Year of Life von Katusiime, Mary Grace, Halvas, Elias K., Wright, Imogen, Joseph, Kevin, Bale, Michael J., Kirby-McCullough, Bronwyn, Engelbrecht, Susan, Shao, Wei, Hu, Wei-Shau, Cotton, Mark F., Mellors, John W., Kearney, Mary F., van Zyl, Gert U.

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Varied Patterns of Decay of Intact Human Immunodeficiency Virus Type 1 Proviruses Over 2 Decades of Antiretroviral Therapy von Gandhi, Rajesh T, Bosch, Ronald J, Mar, Hanna, Laird, Gregory M, Halvas, Elias K, Hovind, Laura, Collier, Ann C, Riddler, Sharon A, Martin, Albine, Ritter, Kristen, McMahon, Deborah K, Eron, Joseph J, Cyktor, Joshua C, Mellors, John W

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Extended Analysis of HIV Infection in Cisgender Men and Transgender Women Who Have Sex with Men Receiving Injectable Cabotegravir for HIV Prevention: HPTN 083 von Marzinke, Mark A, Fogel, Jessica M, Wang, Zhe, Piwowar-Manning, Estelle, Kofron, Ryan, Moser, Amber, Bhandari, Pradip, Gollings, Ryann, Bushman, Lane R, Weng, Lei, Halvas, Elias K, Mellors, John, Anderson, Peter L, Persaud, Deborah, Hendrix, Craig W, McCauley, Marybeth, Rinehart, Alex R, St Clair, Marty, Ford, Susan L, Rooney, James F, Adeyeye, Adeola, Chariyalertsak, Suwat, Mayer, Kenneth, Arduino, Roberto C, Cohen, Myron S, Grinsztejn, Beatriz, Hanscom, Brett, Landovitz, Raphael J, Eshleman, Susan H

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