Over 2.5 million COI sequences in GenBank and growing von Porter, Teresita M, Hajibabaei, Mehrdad

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Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing von BAIRD, DONALD J., HAJIBABAEI, MEHRDAD

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Automated high throughput animal CO1 metabarcode classification von Porter, Teresita M., Hajibabaei, Mehrdad

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Next-generation sequencing technologies for environmental DNA research von SHOKRALLA, SHADI, SPALL, JENNIFER L., GIBSON, JOEL F., HAJIBABAEI, MEHRDAD

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MetaWorks: A flexible, scalable bioinformatic pipeline for high-throughput multi-marker biodiversity assessments von Porter, Teresita M, Hajibabaei, Mehrdad

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Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity von Bista, Iliana, Carvalho, Gary R., Walsh, Kerry, Seymour, Mathew, Hajibabaei, Mehrdad, Lallias, Delphine, Christmas, Martin, Creer, Simon

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COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems von Hajibabaei, Mehrdad, Porter, Teresita M, Wright, Michael, Rudar, Josip

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Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA von McClenaghan, Beverly, Compson, Zacchaeus G, Hajibabaei, Mehrdad

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Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes von McClenaghan, Beverly, Fahner, Nicole, Cote, David, Chawarski, Julek, McCarthy, Avery, Rajabi, Hoda, Singer, Greg, Hajibabaei, Mehrdad

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MetaWorks: A flexible, scalable bioinformatic pipeline for high-throughput multi-marker biodiversity assessments von Teresita M. Porter, Mehrdad Hajibabaei

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DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities von Lobo, Jorge, Shokralla, Shadi, Costa, Maria Helena, Hajibabaei, Mehrdad, Costa, Filipe Oliveira

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Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis von Porter, Teresita M., Hajibabaei, Mehrdad

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Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease von Mottawea, Walid, Chiang, Cheng-Kang, Mühlbauer, Marcus, Starr, Amanda E., Butcher, James, Abujamel, Turki, Deeke, Shelley A., Brandel, Annette, Zhou, Hu, Shokralla, Shadi, Hajibabaei, Mehrdad, Singleton, Ruth, Benchimol, Eric I., Jobin, Christian, Mack, David R., Figeys, Daniel, Stintzi, Alain

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Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers von Fahner, Nicole A, Shokralla, Shadi, Baird, Donald J, Hajibabaei, Mehrdad

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Next‐generation DNA barcoding: using next‐generation sequencing to enhance and accelerate DNA barcode capture from single specimens von Shokralla, Shadi, Gibson, Joel F, Nikbakht, Hamid, Janzen, Daniel H, Hallwachs, Winnie, Hajibabaei, Mehrdad

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Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform von Shokralla, Shadi, Porter, Teresita M., Gibson, Joel F., Dobosz, Rafal, Janzen, Daniel H., Hallwachs, Winnie, Golding, G. Brian, Hajibabaei, Mehrdad

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Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics von Gibson, Joel, Shokralla, Shadi, Porter, Teresita M., King, Ian, van Konynenburg, Steven, Janzen, Daniel H., Hallwachs, Winnie, Hajibabaei, Mehrdad

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Environmental DNA filtration techniques affect recovered biodiversity von Majaneva, Markus, Diserud, Ola H., Eagle, Shannon H. C., Boström, Erik, Hajibabaei, Mehrdad, Ekrem, Torbjørn

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Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos von Hajibabaei, Mehrdad, Shokralla, Shadi, Zhou, Xin, Singer, Gregory A C, Baird, Donald J

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Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol von Hajibabaei, Mehrdad, Spall, Jennifer L, Shokralla, Shadi, van Konynenburg, Steven

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