Genomic methods in profiling DNA accessibility and factor localization von Klein, David C., Hainer, Sarah J.

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High-Resolution Mapping of Chromatin Packaging in Mouse Embryonic Stem Cells and Sperm von Carone, Benjamin R., Hung, Jui-Hung, Hainer, Sarah J., Chou, Min-Te, Carone, Dawn M., Weng, Zhiping, Fazzio, Thomas G., Rando, Oliver J.

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Profiling of Pluripotency Factors in Single Cells and Early Embryos von Hainer, Sarah J., Bošković, Ana, McCannell, Kurtis N., Rando, Oliver J., Fazzio, Thomas G.

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Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet von Viner, Coby, Ishak, Charles A, Johnson, James, Walker, Nicolas J, Shi, Hui, Sjöberg-Herrera, Marcela K, Shen, Shu Yi, Lardo, Santana M, Adams, David J, Ferguson-Smith, Anne C, De Carvalho, Daniel D, Hainer, Sarah J, Bailey, Timothy L, Hoffman, Michael M

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Transcription factor chromatin profiling genome-wide using uliCUT&RUN in single cells and individual blastocysts von Patty, Benjamin J., Hainer, Sarah J.

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The esBAF and ISWI nucleosome remodeling complexes influence occupancy of overlapping dinucleosomes and fragile nucleosomes in murine embryonic stem cells von Klein, David C, Troy, Kris, Tripplehorn, Sarah A, Hainer, Sarah J

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Correction: The esBAF and ISWI nucleosome remodeling complexes influence occupancy of overlapping dinucleosomes and fragile nucleosomes in murine embryonic stem cells von Klein, David C, Troy, Kris, Tripplehorn, Sarah A, Hainer, Sarah J

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Specialized RSC: Substrate Specificities for a Conserved Chromatin Remodeler von Hainer, Sarah J., Kaplan, Craig D.

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High‐Resolution Chromatin Profiling Using CUT&RUN von Hainer, Sarah J., Fazzio, Thomas G.

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Super-resolution imaging reveals the evolution of higher-order chromatin folding in early carcinogenesis von Xu, Jianquan, Ma, Hongqiang, Ma, Hongbin, Jiang, Wei, Mela, Christopher A., Duan, Meihan, Zhao, Shimei, Gao, Chenxi, Hahm, Eun-Ryeong, Lardo, Santana M., Troy, Kris, Sun, Ming, Pai, Reet, Stolz, Donna B., Zhang, Lin, Singh, Shivendra, Brand, Randall E., Hartman, Douglas J., Hu, Jing, Hainer, Sarah J., Liu, Yang

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FACT regulates pluripotency through proximal and distal regulation of gene expression in murine embryonic stem cells von Klein, David C, Lardo, Santana M, McCannell, Kurtis N, Hainer, Sarah J

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Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF von Hainer, Sarah J, Gu, Weifeng, Carone, Benjamin R, Landry, Benjamin D, Rando, Oliver J, Mello, Craig C, Fazzio, Thomas G

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Non-Coding RNAs and Nucleosome Remodeling Complexes: An Intricate Regulatory Relationship von Patty, Benjamin J, Hainer, Sarah J

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Regulation of Nucleosome Architecture and Factor Binding Revealed by Nuclease Footprinting of the ESC Genome von Hainer, Sarah J., Fazzio, Thomas G.

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Intergenic transcription causes repression by directing nucleosome assembly von Hainer, Sarah J, Pruneski, Justin A, Mitchell, Rachel D, Monteverde, Robin M, Martens, Joseph A

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Building and sustaining mentor interactions as a mentee von Sarabipour, Sarvenaz, Hainer, Sarah J., Arslan, Feyza Nur, de Winde, Charlotte M., Furlong, Emily, Bielczyk, Natalia, Jadavji, Nafisa M., Shah, Aparna P., Davla, Sejal

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The classic metal‐sensing transcription factor MTF1 promotes myogenesis in response to copper von Tavera‐Montañez, Cristina, Hainer, Sarah J., Cangussu, Daniella, Gordon, Shellaina J. V., Xiao, Yao, Reyes‐Gutierrez, Pablo, Imbalzano, Anthony N., Navea, Juan G., Fazzio, Thomas G., Padilla‐Benavides, Teresita

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H3.3K122A results in a neomorphic phenotype in mouse embryonic stem cells von Patty, Benjamin J, Jordan, Cailin, Lardo, Santana M, Troy, Kris, Hainer, Sarah J

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HIRA protects telomeres against R-loop-induced instability in ALT cancer cells von Lynskey, Michelle Lee, Brown, Emily E., Bhargava, Ragini, Wondisford, Anne R., Ouriou, Jean-Baptiste, Freund, Oliver, Bowman, Ray W., Smith, Baylee A., Lardo, Santana M., Schamus-Hayes, Sandra, Hainer, Sarah J., O’Sullivan, Roderick J.

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Single-Cell Factor Localization on Chromatin using Ultra-Low Input Cleavage Under Targets and Release using Nuclease von Lardo, Santana M, Hainer, Sarah J

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