Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models von Pandey, Vikash, Hadadi, Noushin, Hatzimanikatis, Vassily

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NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism von MohammadiPeyhani, Homa, Chiappino-Pepe, Anush, Haddadi, Kiandokht, Hafner, Jasmin, Hadadi, Noushin, Hatzimanikatis, Vassily

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Comparative multi-tissue profiling reveals extensive tissue-specificity in transcriptome reprogramming during thermal adaptation von Hadadi, Noushin, Spiljar, Martina, Steinbach, Karin, Çolakoğlu, Melis, Chevalier, Claire, Salinas, Gabriela, Merkler, Doron, Trajkovski, Mirko

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Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data von Özel Duygan, Birge D., Hadadi, Noushin, Babu, Ambrin Farizah, Seyfried, Markus, van der Meer, Jan R.

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Design of computational retrobiosynthesis tools for the design of de novo synthetic pathways von Hadadi, Noushin, Hatzimanikatis, Vassily

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AMPK Profiling in Rodent and Human Pancreatic Beta-Cells under Nutrient-Rich Metabolic Stress von Brun, Thierry, Jiménez-Sánchez, Cecilia, Madsen, Jesper Grud Skat, Hadadi, Noushin, Duhamel, Dominique, Bartley, Clarissa, Oberhauser, Lucie, Trajkovski, Mirko, Mandrup, Susanne, Maechler, Pierre

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Environmental connectivity controls diversity in soil microbial communities von Dubey, Manupriyam, Hadadi, Noushin, Pelet, Serge, Carraro, Nicolas, Johnson, David R., van der Meer, Jan R.

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Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils von Morales, Marian, Sentchilo, Vladimir, Hadadi, Noushin, van der Meer, Jan Roelof

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Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models von Hadadi, Noushin, Pandey, Vikash, Chiappino-Pepe, Anush, Morales, Marian, Gallart-Ayala, Hector, Mehl, Florence, Ivanisevic, Julijana, Sentchilo, Vladimir, Meer, Jan R. van der

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Human blood cell transcriptomics unveils dynamic systemic immune modulation along colorectal cancer progression von Martinez-Usatorre, Amaia, Ciarloni, Laura, Angelino, Paolo, Wosika, Victoria, Conforte, Alessandra Jordano, Fonseca Costa, Sara S, Durandau, Eric, Monnier-Benoit, Sylvain, Satizabal, Hector Fabio, Despraz, Jérémie, Perez-Uribe, Andres, Delorenzi, Mauro, Morgenthaler, Stephan, Hashemi, Brian, Hadadi, Noushin, Hosseinian-Ehrensberger, Sahar, Romero, Pedro J

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172 Cancer immunotherapy response monitoring with whole blood immuno-transcriptomic profiling von Romero, Pedro, Ciarloni, Laura, Hadadi, Noushin, Koornstra, Rutger, Wilpe, Sandra van, Durandau, Eric, Ehrensberger, Sahar Hosseinian, Monnier-Benoit, Sylvain, Mehra, Niven

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Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites von Hadadi, Noushin, MohammadiPeyhani, Homa, Miskovic, Ljubisa, Seijo, Marianne, Hatzimanikatis, Vassily

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ATLAS of Biochemistry: A Repository of All Possible Biochemical Reactions for Synthetic Biology and Metabolic Engineering Studies von Hadadi, Noushin, Hafner, Jasmin, Shajkofci, Adrian, Zisaki, Aikaterini, Hatzimanikatis, Vassily

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Author Correction: Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models von Hadadi, Noushin, Pandey, Vikash, Chiappino-Pepe, Anush, Morales, Marian, Gallart-Ayala, Hector, Mehl, Florence, Ivanisevic, Julijana, Sentchilo, Vladimir, van der Meer, Jan R.

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Warmth Prevents Bone Loss Through the Gut Microbiota von Chevalier, Claire, Kieser, Silas, Çolakoğlu, Melis, Hadadi, Noushin, Brun, Julia, Rigo, Dorothée, Suárez-Zamorano, Nicolas, Spiljar, Martina, Fabbiano, Salvatore, Busse, Björn, Ivanišević, Julijana, Macpherson, Andrew, Bonnet, Nicolas, Trajkovski, Mirko

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A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactions von Vayena, Evangelia, Chiappino-Pepe, Anush, MohammadiPeyhani, Homa, Francioli, Yannick, Hadadi, Noushin, Ataman, Meriç, Hafner, Jasmin, Pavlou, Stavros, Hatzimanikatis, Vassily

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Next-generation whole blood transcriptome-based assay for advanced adenoma detection von Ehrensberger, Sahar Hosseinian, Wosika, Victoria, Hadadi, Noushin, Fonseca Costa, Sara, Durandau, Eric, Monnier-Benoit, Sylvain, Ciarloni, Laura, Scherer, Stefan J., Tejpar, Sabine

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Intestinal microbiota as a route for micronutrient bioavailability von Hadadi, Noushin, Berweiler, Vincent, Wang, Haiping, Trajkovski, Mirko

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Exploring biochemical pathways for mono-ethylene glycol (MEG) synthesis from synthesis gas von Islam, M. Ahsanul, Hadadi, Noushin, Ataman, Meric, Hatzimanikatis, Vassily, Stephanopoulos, Gregory

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Cold exposure protects from neuroinflammation through immunologic reprogramming von Spiljar, Martina, Steinbach, Karin, Rigo, Dorothée, Suárez-Zamorano, Nicolas, Wagner, Ingrid, Hadadi, Noushin, Vincenti, Ilena, Page, Nicolas, Klimek, Bogna, Rochat, Mary-Aude, Kreutzfeldt, Mario, Chevalier, Claire, Stojanović, Ozren, Bejuy, Olivia, Colin, Didier, Mack, Matthias, Cansever, Dilay, Greter, Melanie, Merkler, Doron, Trajkovski, Mirko

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