HLA-DRB10401 and HLA-DRB10408 Are Strongly Associated with the Development of Antibodies against Interferon-β Therapy in Multiple Sclerosis von HOFFMANN, Steve, CEPOK, Sabine, HEMMER, Bernhard, GRUMMEL, Verena, LEHMANN-HORN, Klaus, HACKERMUELLER, Jörg, STADLER, Peter F, HARTUNG, Hans-Peter, BERTHELE, Achim, DEISENHAMMER, Florian, WASMUTH, Ralf

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multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection von Hoffmann, Steve, Otto, Christian, Doose, Gero, Tanzer, Andrea, Langenberger, David, Christ, Sabina, Kunz, Manfred, Holdt, Lesca M, Teupser, Daniel, Hackermüller, Jörg, Stadler, Peter F

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Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci von Kirsten, Holger, Al-Hasani, Hoor, Holdt, Lesca, Gross, Arnd, Beutner, Frank, Krohn, Knut, Horn, Katrin, Ahnert, Peter, Burkhardt, Ralph, Reiche, Kristin, Hackermüller, Jörg, Löffler, Markus, Teupser, Daniel, Thiery, Joachim, Scholz, Markus

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A data-derived reference mixture representative of European wastewater treatment plant effluents to complement mixture assessment von Beckers, Liza-Marie, Altenburger, Rolf, Brack, Werner, Escher, Beate I., Hackermüller, Jörg, Hassold, Enken, Illing, Gianina, Krauss, Martin, Krüger, Janet, Michaelis, Paul, Schüttler, Andreas, Stevens, Sarah, Busch, Wibke

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ProstaTrend—A Multivariable Prognostic RNA Expression Score for Aggressive Prostate Cancer von Kreuz, Markus, Otto, Dominik J., Fuessel, Susanne, Blumert, Conny, Bertram, Catharina, Bartsch, Sophie, Loeffler, Dennis, Puppel, Sven-Holger, Rade, Michael, Buschmann, Tilo, Christ, Sabina, Erdmann, Kati, Friedrich, Maik, Froehner, Michael, Muders, Michael H., Schreiber, Stephan, Specht, Michael, Toma, Marieta I., Benigni, Fabio, Freschi, Massimo, Gandaglia, Giorgio, Briganti, Alberto, Baretton, Gustavo B., Loeffler, Markus, Hackermüller, Jörg, Reiche, Kristin, Wirth, Manfred, Horn, Friedemann

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CEM-Designer: Design of custom expression microarrays in the post-ENCODE Era von Arnold, Christian, Externbrink, Fabian, Hackermüller, Jörg, Reiche, Kristin

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HLA-DRB1 0401 and HLA-DRB10408 Are Strongly Associated with the Development of Antibodies against Interferon-[beta] Therapy in Multiple Sclerosis von Hoffmann, Steve, Cepok, Sabine, Grummel, Verena, Lehmann-Horn, Klaus, Hackermueller, Jörg, Stadler, Peter F, Hartung, Hans-Peter, Berthele, Achim, Deisenhammer, Florian, Wasmuth, Ralf, Hemmer, Bernhard

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HLA-DRB1∗0401 and HLA-DRB1∗0408 Are Strongly Associated with the Development of Antibodies against Interferon-β Therapy in Multiple Sclerosis von Hoffmann, Steve, Cepok, Sabine, Grummel, Verena, Lehmann-Horn, Klaus, Hackermueller, Jörg, Stadler, Peter F., Hartung, Hans-Peter, Berthele, Achim, Deisenhammer, Florian, Wasmuth, Ralf, Hemmer, Bernhard

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Advancing the use of noncoding RNA in regulatory toxicology: Report of an ECETOC workshop von Aigner, Achim, Buesen, Roland, Gant, Tim, Gooderham, Nigel, Greim, Helmut, Hackermüller, Jörg, Hubesch, Bruno, Laffont, Madeleine, Marczylo, Emma, Meister, Gunter, Petrick, Jay S., Rasoulpour, Reza J., Sauer, Ursula G., Schmidt, Kerstin, Seitz, Hervé, Slack, Frank, Sukata, Tokuo, van der Vies, Saskia M., Verhaert, Jan, Witwer, Kenneth W., Poole, Alan

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Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs von Hackermüller, Jörg, Reiche, Kristin, Otto, Christian, Hösler, Nadine, Blumert, Conny, Brocke-Heidrich, Katja, Böhlig, Levin, Nitsche, Anne, Kasack, Katharina, Ahnert, Peter, Krupp, Wolfgang, Engeland, Kurt, Stadler, Peter F, Horn, Friedemann

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Prospects and challenges of multi-omics data integration in toxicology von Canzler, Sebastian, Schor, Jana, Busch, Wibke, Schubert, Kristin, Rolle-Kampczyk, Ulrike E., Seitz, Hervé, Kamp, Hennicke, von Bergen, Martin, Buesen, Roland, Hackermüller, Jörg

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The primary transcriptome of the major human pathogen Helicobacter pylori von Vogel, Jörg, Sharma, Cynthia M, Hoffmann, Steve, Darfeuille, Fabien, Reignier, Jérémy, Findeiß, Sven, Sittka, Alexandra, Chabas, Sandrine, Reiche, Kristin, Hackermüller, Jörg, Reinhardt, Richard, Stadler, Peter F

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deepFPlearn +: enhancing toxicity prediction across the chemical universe using graph neural networks von Soulios, Kyriakos, Scheibe, Patrick, Bernt, Matthias, Hackermüller, Jörg, Schor, Jana

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Alzheimer-related genes show accelerated evolution von Nitsche, Anne, Arnold, Christian, Ueberham, Uwe, Reiche, Kristin, Fallmann, Jörg, Hackermüller, Jörg, Horn, Friedemann, Stadler, Peter F., Arendt, Thomas

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Fast mapping of short sequences with mismatches, insertions and deletions using index structures von Hoffmann, Steve, Otto, Christian, Kurtz, Stefan, Sharma, Cynthia M, Khaitovich, Philipp, Vogel, Jörg, Stadler, Peter F, Hackermüller, Jörg

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Comparison of quantitation methods in proteomics to define relevant toxicological information on AhR activation of HepG2 cells by BaP von Wang, Zhipeng, Karkossa, Isabel, Großkopf, Henning, Rolle-Kampczyk, Ulrike, Hackermüller, Jörg, von Bergen, Martin, Schubert, Kristin

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RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription von Kapranov, Philipp, Cheng, Jill, Dike, Sujit, Nix, David A., Duttagupta, Radharani, Willingham, Aarron T., Stadler, Peter F., Hertel, Jana, Hackermüller, Jörg, Hofacker, Ivo L., Bell, Ian, Cheung, Evelyn, Drenkow, Jorg, Dumais, Erica, Patel, Sandeep, Helt, Gregg, Ganesh, Madhavan, Ghosh, Srinka, Piccolboni, Antonio, Sementchenko, Victor, Tammana, Hari, Gingeras, Thomas R.

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AI for predicting chemical-effect associations at the chemical universe level—deepFPlearn von Schor, Jana, Scheibe, Patrick, Bernt, Matthias, Busch, Wibke, Lai, Chih, Hackermüller, Jörg

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HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids von Völkner, Manuela, Wagner, Felix, Steinheuer, Lisa Maria, Carido, Madalena, Kurth, Thomas, Yazbeck, Ali, Schor, Jana, Wieneke, Stephanie, Ebner, Lynn J. A., Del Toro Runzer, Claudia, Taborsky, David, Zoschke, Katja, Vogt, Marlen, Canzler, Sebastian, Hermann, Andreas, Khattak, Shahryar, Hackermüller, Jörg, Karl, Mike O.

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Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications von Jahreis, Susanne, PhD, Trump, Saskia, PhD, Bauer, Mario, MD, Bauer, Tobias, PhD, Thürmann, Loreen, MSc, Feltens, Ralph, PhD, Wang, Qi, PhD, Gu, Lei, PhD, Grützmann, Konrad, PhD, Röder, Stefan, PhD, Averbeck, Marco, MD, Weichenhan, Dieter, PhD, Plass, Christoph, PhD, Sack, Ulrich, MD, Borte, Michael, MD, Dubourg, Virginie, MSc, Schüürmann, Gerrit, PhD, Simon, Jan C., MD, von Bergen, Martin, PhD, Hackermüller, Jörg, PhD, Eils, Roland, PhD, Lehmann, Irina, PhD, Polte, Tobias, PhD

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