MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics von Ting, Lily, Rad, Ramin, Gygi, Steven P, Haas, Wilhelm

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Pharmacological perturbation of CDK9 using selective CDK9 inhibition or degradation von Olson, Calla M, Jiang, Baishan, Erb, Michael A, Liang, Yanke, Doctor, Zainab M, Zhang, Zinan, Zhang, Tinghu, Kwiatkowski, Nicholas, Boukhali, Myriam, Green, Jennifer L, Haas, Wilhelm, Nomanbhoy, Tyzoon, Fischer, Eric S, Young, Richard A, Bradner, James E, Winter, Georg E, Gray, Nathanael S

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MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes von McAlister, Graeme C, Nusinow, David P, Jedrychowski, Mark P, Wühr, Martin, Huttlin, Edward L, Erickson, Brian K, Rad, Ramin, Haas, Wilhelm, Gygi, Steven P

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A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation von Minajigi, Anand, Froberg, John E., Wei, Chunyao, Sunwoo, Hongjae, Kesner, Barry, Colognori, David, Lessing, Derek, Payer, Bernhard, Boukhali, Myriam, Haas, Wilhelm, Lee, Jeannie T.

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Transcriptional control of autophagy–lysosome function drives pancreatic cancer metabolism von Perera, Rushika M., Stoykova, Svetlana, Nicolay, Brandon N., Ross, Kenneth N., Fitamant, Julien, Boukhali, Myriam, Lengrand, Justine, Deshpande, Vikram, Selig, Martin K., Ferrone, Cristina R., Settleman, Jeff, Stephanopoulos, Gregory, Dyson, Nicholas J., Zoncu, Roberto, Ramaswamy, Sridhar, Haas, Wilhelm, Bardeesy, Nabeel

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Global characterization of macrophage polarization mechanisms and identification of M2-type polarization inhibitors von He, Lizhi, Jhong, Jhih-Hua, Chen, Qi, Huang, Kai-Yao, Strittmatter, Karin, Kreuzer, Johannes, DeRan, Michael, Wu, Xu, Lee, Tzong-Yi, Slavov, Nikolai, Haas, Wilhelm, Marneros, Alexander G.

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Tau Contributes to Sevoflurane-induced Neurocognitive Impairment in Neonatal Mice von Yu, Yang, Yang, Yongyan, Tan, Hong, Boukhali, Myriam, Khatri, Ashok, Yu, Yonghao, Hua, Fuzhou, Liu, Ling, Li, Mengzhu, Yang, Guang, Dong, Yuanlin, Zhang, Yiying, Haas, Wilhelm, Xie, Zhongcong

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Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis von Ebright, Richard Y, Lee, Sooncheol, Wittner, Ben S, Niederhoffer, Kira L, Nicholson, Benjamin T, Bardia, Aditya, Truesdell, Samuel, Wiley, Devon F, Wesley, Benjamin, Li, Selena, Mai, Andy, Aceto, Nicola, Vincent-Jordan, Nicole, Szabolcs, Annamaria, Chirn, Brian, Kreuzer, Johannes, Comaills, Valentine, Kalinich, Mark, Haas, Wilhelm, Ting, David T, Toner, Mehmet, Vasudevan, Shobha, Haber, Daniel A, Maheswaran, Shyamala, Micalizzi, Douglas S

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Detection of dysregulated protein-association networks by high-throughput proteomics predicts cancer vulnerabilities von Lapek, John D, Greninger, Patricia, Morris, Robert, Amzallag, Arnaud, Pruteanu-Malinici, Iulian, Benes, Cyril H, Haas, Wilhelm

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A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression von Huttlin, Edward L., Jedrychowski, Mark P., Elias, Joshua E., Goswami, Tapasree, Rad, Ramin, Beausoleil, Sean A., Villén, Judit, Haas, Wilhelm, Sowa, Mathew E., Gygi, Steven P.

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Mitochondrial Permeability Uncouples Elevated Autophagy and Lifespan Extension von Zhou, Ben, Kreuzer, Johannes, Kumsta, Caroline, Wu, Lianfeng, Kamer, Kimberli J., Cedillo, Lucydalila, Zhang, Yuyao, Li, Sainan, Kacergis, Michael C., Webster, Christopher M., Fejes-Toth, Geza, Naray-Fejes-Toth, Aniko, Das, Sudeshna, Hansen, Malene, Haas, Wilhelm, Soukas, Alexander A.

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Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance von Iglesias, Nahid, Paulo, Joao A., Tatarakis, Antonis, Wang, Xiaoyi, Edwards, Amanda L., Bhanu, Natarajan V., Garcia, Benjamin A., Haas, Wilhelm, Gygi, Steven P., Moazed, Danesh

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A Code of Mono-phosphorylation Modulates the Function of RB von Sanidas, Ioannis, Morris, Robert, Fella, Katerina A., Rumde, Purva H., Boukhali, Myriam, Tai, Eric C., Ting, David T., Lawrence, Michael S., Haas, Wilhelm, Dyson, Nicholas J.

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Coupling of Homologous Recombination and the Checkpoint by ATR von Buisson, Rémi, Niraj, Joshi, Rodrigue, Amélie, Ho, Chu Kwen, Kreuzer, Johannes, Foo, Tzeh Keong, Hardy, Emilie J.-L., Dellaire, Graham, Haas, Wilhelm, Xia, Bing, Masson, Jean-Yves, Zou, Lee

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Mutant GNAS drives pancreatic tumourigenesis by inducing PKA-mediated SIK suppression and reprogramming lipid metabolism von Patra, Krushna C., Kato, Yasutaka, Mizukami, Yusuke, Widholz, Sebastian, Boukhali, Myriam, Revenco, Iulia, Grossman, Elizabeth A., Ji, Fei, Sadreyev, Ruslan I., Liss, Andrew S., Screaton, Robert A., Sakamoto, Kei, Ryan, David P., Mino-Kenudson, Mari, Castillo, Carlos Fernandez-del, Nomura, Daniel K., Haas, Wilhelm, Bardeesy, Nabeel

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On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development von Peshkin, Leonid, Wühr, Martin, Pearl, Esther, Haas, Wilhelm, Freeman, Robert M., Gerhart, John C., Klein, Allon M., Horb, Marko, Gygi, Steven P., Kirschner, Marc W.

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A large-scale method to measure absolute protein phosphorylation stoichiometries von Wu, Ronghu, Haas, Wilhelm, Dephoure, Noah, Huttlin, Edward L, Zhai, Bo, Sowa, Mathew E, Gygi, Steven P

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Succinate dehydrogenase is a direct target of sirtuin 3 deacetylase activity von Finley, Lydia W S, Haas, Wilhelm, Desquiret-Dumas, Valérie, Wallace, Douglas C, Procaccio, Vincent, Gygi, Steven P, Haigis, Marcia C

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FGFR inhibition blocks NF-ĸB-dependent glucose metabolism and confers metabolic vulnerabilities in cholangiocarcinoma von Zhen, Yuanli, Liu, Kai, Shi, Lei, Shah, Simran, Xu, Qin, Ellis, Haley, Balasooriya, Eranga R., Kreuzer, Johannes, Morris, Robert, Baldwin, Albert S., Juric, Dejan, Haas, Wilhelm, Bardeesy, Nabeel

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Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations von Gygi, Steven P, Elias, Joshua E, Haas, Wilhelm, Faherty, Brendan K

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