QUAST: quality assessment tool for genome assemblies von Gurevich, Alexey, Saveliev, Vladislav, Vyahhi, Nikolay, Tesler, Glenn

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MetaQUAST: evaluation of metagenome assemblies von Mikheenko, Alla, Saveliev, Vladislav, Gurevich, Alexey

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MolDiscovery: learning mass spectrometry fragmentation of small molecules von Cao, Liu, Guler, Mustafa, Tagirdzhanov, Azat, Lee, Yi-Yuan, Gurevich, Alexey, Mohimani, Hosein

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing von Bankevich, Anton, Nurk, Sergey, Antipov, Dmitry, Gurevich, Alexey A, Dvorkin, Mikhail, Kulikov, Alexander S, Lesin, Valery M, Nikolenko, Sergey I, Pham, Son, Prjibelski, Andrey D, Pyshkin, Alexey V, Sirotkin, Alexander V, Vyahhi, Nikolay, Tesler, Glenn, Alekseyev, Max A, Pevzner, Pavel A

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metaFlye: scalable long-read metagenome assembly using repeat graphs von Kolmogorov, Mikhail, Bickhart, Derek M., Behsaz, Bahar, Gurevich, Alexey, Rayko, Mikhail, Shin, Sung Bong, Kuhn, Kristen, Yuan, Jeffrey, Polevikov, Evgeny, Smith, Timothy P. L., Pevzner, Pavel A.

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Dereplication of microbial metabolites through database search of mass spectra von Mohimani, Hosein, Gurevich, Alexey, Shlemov, Alexander, Mikheenko, Alla, Korobeynikov, Anton, Cao, Liu, Shcherbin, Egor, Nothias, Louis-Felix, Dorrestein, Pieter C., Pevzner, Pavel A.

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Assembling single-cell genomes and mini-metagenomes from chimeric MDA products von Nurk, Sergey, Bankevich, Anton, Antipov, Dmitry, Gurevich, Alexey A, Korobeynikov, Anton, Lapidus, Alla, Prjibelski, Andrey D, Pyshkin, Alexey, Sirotkin, Alexander, Sirotkin, Yakov, Stepanauskas, Ramunas, Clingenpeel, Scott R, Woyke, Tanja, McLean, Jeffrey S, Lasken, Roger, Tesler, Glenn, Alekseyev, Max A, Pevzner, Pavel A

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Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery von Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodríguez, Andrés Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A., Mohimani, Hosein

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Dereplication of peptidic natural products through database search of mass spectra von Mohimani, Hosein, Gurevich, Alexey, Mikheenko, Alla, Garg, Neha, Nothias, Louis-Felix, Ninomiya, Akihiro, Takada, Kentaro, Dorrestein, Pieter C, Pevzner, Pavel A

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Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit von Meyer, Fernando, Lesker, Till-Robin, Koslicki, David, Fritz, Adrian, Gurevich, Alexey, Darling, Aaron E., Sczyrba, Alexander, Bremges, Andreas, McHardy, Alice C.

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Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products von Nurk, Sergey, Bankevich, Anton, Antipov, Dmitry, Gurevich, Alexey A., Korobeynikov, Anton, Lapidus, Alla, Prjibelski, Andrey D., Pyshkin, Alexey, Sirotkin, Alexander, Sirotkin, Yakov, Stepanauskas, Ramunas, Clingenpeel, Scott R., Woyke, Tanja, Mclean, Jeffrey S., Lasken, Roger, Tesler, Glenn, Alekseyev, Max A., Pevzner, Pavel A.

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Exploring microbial diversity and biosynthetic potential in zoo and wildlife animal microbiomes von Schmartz, Georges P., Rehner, Jacqueline, Schuff, Miriam J., Molano, Leidy-Alejandra G., Becker, Sören L., Krawczyk, Marcin, Tagirdzhanov, Azat, Gurevich, Alexey, Francke, Richard, Müller, Rolf, Keller, Verena, Keller, Andreas

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Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery von Behsaz, Bahar, Bode, Edna, Gurevich, Alexey, Shi, Yan-Ni, Grundmann, Florian, Acharya, Deepa, Caraballo-Rodríguez, Andrés Mauricio, Bouslimani, Amina, Panitchpakdi, Morgan, Linck, Annabell, Guan, Changhui, Oh, Julia, Dorrestein, Pieter C., Bode, Helge B., Pevzner, Pavel A., Mohimani, Hosein

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HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search von Lee, Yi-Yuan, Guler, Mustafa, Chigumba, Desnor N., Wang, Shen, Mittal, Neel, Miller, Cameron, Krummenacher, Benjamin, Liu, Haodong, Cao, Liu, Kannan, Aditya, Narayan, Keshav, Slocum, Samuel T., Roth, Bryan L., Gurevich, Alexey, Behsaz, Bahar, Kersten, Roland D., Mohimani, Hosein

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NPvis: An Interactive Visualizer of Peptidic Natural Product–MS/MS Matches von Kunyavskaya, Olga, Mikheenko, Alla, Gurevich, Alexey

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Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra von Gurevich, Alexey, Mikheenko, Alla, Shlemov, Alexander, Korobeynikov, Anton, Mohimani, Hosein, Pevzner, Pavel A.

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Versatile genome assembly evaluation with QUAST-LG von Mikheenko, Alla, Prjibelski, Andrey, Saveliev, Vladislav, Antipov, Dmitry, Gurevich, Alexey

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A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria von Leao, Tiago, Wang, Mingxun, Moss, Nathan, da Silva, Ricardo, Sanders, Jon, Nurk, Sergey, Gurevich, Alexey, Humphrey, Gregory, Reher, Raphael, Zhu, Qiyun, Belda-Ferre, Pedro, Glukhov, Evgenia, Whitner, Syrena, Alexander, Kelsey L., Rex, Robert, Pevzner, Pavel, Dorrestein, Pieter C., Knight, Rob, Bandeira, Nuno, Gerwick, William H., Gerwick, Lena

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Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules von Edlund, Anna, Garg, Neha, Mohimani, Hosein, Gurevich, Alexey, He, Xuesong, Shi, Wenyuan, Dorrestein, Pieter C, McLean, Jeffrey S

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Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides von Kunyavskaya, Olga, Tagirdzhanov, Azat M., Caraballo-Rodriguez, Andres Mauricio, Nothias, Louis-Felix, Dorrestein, Pieter C., Korobeynikov, Anton, Mohimani, Hosein, Gurevich, Alexey

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