High-throughput sequencing of complete human mtDNA genomes from the Philippines von Gunnarsdóttir, Ellen D, Li, Mingkun, Bauchet, Marc, Finstermeier, Knut, Stoneking, Mark

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The Y-chromosome point mutation rate in humans von Helgason, Agnar, Einarsson, Axel W, Guðmundsdóttir, Valdís B, Sigurðsson, Ásgeir, Gunnarsdóttir, Ellen D, Jagadeesan, Anuradha, Ebenesersdóttir, S Sunna, Kong, Augustine, Stefánsson, Kári

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Reconstructing an African haploid genome from the 18th century von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., Ebenesersdóttir, S. Sunna, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Dugoujon, Jean-Michel, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Ancient genomes from Iceland reveal the making of a human population von Ebenesersdóttir, S Sunna, Sandoval-Velasco, Marcela, Gunnarsdóttir, Ellen D, Jagadeesan, Anuradha, Guðmundsdóttir, Valdís B, Thordardóttir, Elísabet L, Einarsdóttir, Margrét S, Moore, Kristjan H S, Sigurðsson, Ásgeir, Magnúsdóttir, Droplaug N, Jónsson, Hákon, Snorradóttir, Steinunn, Hovig, Eivind, Møller, Pål, Kockum, Ingrid, Olsson, Tomas, Alfredsson, Lars, Hansen, Thomas F, Werge, Thomas, Cavalleri, Gianpiero L, Gilbert, Edmund, Lalueza-Fox, Carles, Walser, 3rd, Joe W, Kristjánsdóttir, Steinunn, Gopalakrishnan, Shyam, Árnadóttir, Lilja, Magnússon, Ólafur Þ, Gilbert, M Thomas P, Stefánsson, Kári, Helgason, Agnar

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Complete mtDNA genomes of Filipino ethnolinguistic groups: a melting pot of recent and ancient lineages in the Asia-Pacific region von Delfin, Frederick, Min-Shan Ko, Albert, Li, Mingkun, Gunnarsdóttir, Ellen D, Tabbada, Kristina A, Salvador, Jazelyn M, Calacal, Gayvelline C, Sagum, Minerva S, Datar, Francisco A, Padilla, Sabino G, De Ungria, Maria Corazon A, Stoneking, Mark

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Ancient genomes from Iceland reveal the making of a human population von Ebenesersdóttir, Sigríður Sunna, Sandoval-Velasco, Marcela, Gunnarsdóttir, Ellen D, Jagadeesan, Anuradha, Guðmundsdóttir, Valdís B, Thordardóttir, Elísabet L, Einarsdóttir, Margrét S, Moore, Kristjan H. S, Sigurðsson, Ásgeir, Magnúsdóttir, Droplaug N, Jónsson, Hákon, Snorradóttir, Steinunn, Hovig, Eivind, Møller, Pål, Kockum, Ingrid, Olsson, Tomas, Alfredsson, Lars, Hansen, Thomas F, Werge, Thomas, Cavalleri, Gianpiero L, Gilbert, Edmund, Lalueza-Fox, Carles, Walser III, Joe W, Kristjánsdóttir, Steinunn, Gopalakrishnan, Shyam, Arnadottir, Lilja, Magnússon, Ólafur Þ, Gilbert, Marcus Thomas Pius, Stefánsson, Kári, Helgason, Agnar

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Reconstructing an African haploid genome from the 18th century (all files) von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Figure 14. MDS/PCA plots within West Africa von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 3. Filtering HAPMIX inferred African fragments von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Figure 15. wIBS and IBD (Affymetrix) von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 1. SNP Genotyping von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 10. Assembled African fragments from WGS data von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 6. Assembled African fragments from chip data von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Figure 11. PCA plots with worldwide reference populations von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 11. Reference populations von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Figure 10. Decay of African ancestry von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 2. Genotyped descendants of HJ von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 4. Comparison of Ancestry methods von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Table 8. Estimation of imputation error rate von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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Supplementary Figure 13. MDS plots with African reference populations (Affymetrix) von Jagadeesan, Anuradha, Gunnarsdóttir, Ellen D., S. Sunna Ebenesersdóttir, Guðmundsdóttir, Valdis B., Thordardottir, Elisabet Linda, Einarsdóttir, Margrét S., Jónsson, Hákon, Jean-Michel Dugoujon, Fortes-Lima, Cesar, Migot-Nabias, Florence, Massougbodji, Achille, Bellis, Gil, Pereira, Luisa, Másson, Gísli, Kong, Augustine, Stefánsson, Kári, Helgason, Agnar

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