Master Transcription Factors Determine Cell-Type-Specific Responses to TGF-β Signaling von Mullen, Alan C., Orlando, David A., Newman, Jamie J., Lovén, Jakob, Kumar, Roshan M., Bilodeau, Steve, Reddy, Jessica, Guenther, Matthew G., DeKoter, Rodney P., Young, Richard A.

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Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome von Orlando, David A., Chen, Mei Wei, Brown, Victoria E., Solanki, Snehakumari, Choi, Yoon J., Olson, Eric R., Fritz, Christian C., Bradner, James E., Guenther, Matthew G.

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A chromatin landmark and transcription initiation at most promoters in human cells von Guenther, Matthew G, Levine, Stuart S, Boyer, Laurie A, Jaenisch, Rudolf, Young, Richard A

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Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells von Sigova, Alla A., Mullen, Alan C., Molinie, Benoit, Gupta, Sumeet, Orlando, David A., Guenther, Matthew G., Almada, Albert E., Lin, Charles, Sharp, Phillip A., Giallourakis, Cosmas C., Young, Richard A.

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Chromatin Structure and Gene Expression Programs of Human Embryonic and Induced Pluripotent Stem Cells von Guenther, Matthew G., Frampton, Garrett M., Soldner, Frank, Hockemeyer, Dirk, Mitalipova, Maya, Jaenisch, Rudolf, Young, Richard A.

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Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells von Marson, Alexander, Levine, Stuart S., Cole, Megan F., Frampton, Garrett M., Brambrink, Tobias, Johnstone, Sarah, Guenther, Matthew G., Johnston, Wendy K., Wernig, Marius, Newman, Jamie, Calabrese, J. Mauro, Dennis, Lucas M., Volkert, Thomas L., Gupta, Sumeet, Love, Jennifer, Hannett, Nancy, Sharp, Phillip A., Bartel, David P., Jaenisch, Rudolf, Young, Richard A.

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Derivation of Pre-X Inactivation Human Embryonic Stem Cells under Physiological Oxygen Concentrations von Lengner, Christopher J., Gimelbrant, Alexander A., Erwin, Jennifer A., Cheng, Albert Wu, Guenther, Matthew G., Welstead, G. Grant, Alagappan, Raaji, Frampton, Garrett M., Xu, Ping, Muffat, Julien, Santagata, Sandro, Powers, Doug, Barrett, C. Brent, Young, Richard A., Lee, Jeannie T., Jaenisch, Rudolf, Mitalipova, Maisam

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Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells von Boyer, Laurie A., Lee, Tong Ihn, Cole, Megan F., Johnstone, Sarah E., Levine, Stuart S., Zucker, Jacob P., Guenther, Matthew G., Kumar, Roshan M., Murray, Heather L., Jenner, Richard G., Gifford, David K., Melton, Douglas A., Jaenisch, Rudolf, Young, Richard A.

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Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia von Guenther, Matthew G, Lawton, Lee N, Rozovskaia, Tatiana, Frampton, Garrett M, Levine, Stuart S, Volkert, Thomas L, Croce, Carlo M, Nakamura, Tatsuya, Canaani, Eli, Young, Richard A

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Global and Hox-Specific Roles for the MLL1 Methyltransferase von Guenther, Matthew G., Jenner, Richard G., Chevalier, Brett, Nakamura, Tatsuya, Croce, Carlo M., Canaani, Eli, Young, Richard A.

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Grounded: Transcriptional Pausing in Naive mESCs von Guenther, Matthew G., Young, Richard A.

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Genome-wide localization of small molecules von Anders, Lars, Guenther, Matthew G, Qi, Jun, Fan, Zi Peng, Marineau, Jason J, Rahl, Peter B, Lovén, Jakob, Sigova, Alla A, Smith, William B, Lee, Tong Ihn, Bradner, James E, Young, Richard A

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Superenhancer Analysis Defines Novel Epigenomic Subtypes of Non-APL AML, Including an RARα Dependency Targetable by SY-1425, a Potent and Selective RARα Agonist von McKeown, Michael R, Corces, M Ryan, Eaton, Matthew L, Fiore, Chris, Lee, Emily, Lopez, Jeremy T, Chen, Mei Wei, Smith, Darren, Chan, Steven M, Koenig, Julie L, Austgen, Kathryn, Guenther, Matthew G, Orlando, David A, Lovén, Jakob, Fritz, Christian C, Majeti, Ravindra

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Assembly of the SMRT-histone deacetylase 3 repression complex requires the TCP-1 ring complex von Guenther, Matthew G, Yu, Jiujiu, Kao, Gary D, Yen, Tim J, Lazar, Mitchell A

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ΔNp63/p73 drive metastatic colonization by controlling a regenerative epithelial stem cell program in quasi-mesenchymal cancer stem cells von Lambert, Arthur W., Fiore, Christopher, Chutake, Yogesh, Verhaar, Elisha R., Strasser, Patrick C., Chen, Mei Wei, Farouq, Daneyal, Das, Sunny, Li, Xin, Eaton, Elinor Ng, Zhang, Yun, Liu Donaher, Joana, Engstrom, Ian, Reinhardt, Ferenc, Yuan, Bingbing, Gupta, Sumeet, Wollison, Bruce, Eaton, Matthew, Bierie, Brian, Carulli, John, Olson, Eric R., Guenther, Matthew G., Weinberg, Robert A.

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Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells von Lee, Tong Ihn, Jenner, Richard G., Boyer, Laurie A., Guenther, Matthew G., Levine, Stuart S., Kumar, Roshan M., Chevalier, Brett, Johnstone, Sarah E., Cole, Megan F., Isono, Kyo-ichi, Koseki, Haruhiko, Fuchikami, Takuya, Abe, Kuniya, Murray, Heather L., Zucker, Jacob P., Yuan, Bingbing, Bell, George W., Herbolsheimer, Elizabeth, Hannett, Nancy M., Sun, Kaiming, Odom, Duncan T., Otte, Arie P., Volkert, Thomas L., Bartel, David P., Melton, Douglas A., Gifford, David K., Jaenisch, Rudolf, Young, Richard A.

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Histone Deacetylase Is a Direct Target of Valproic Acid, a Potent Anticonvulsant, Mood Stabilizer, and Teratogen von Phiel, Christopher J., Zhang, Fang, Huang, Eric Y., Guenther, Matthew G., Lazar, Mitchell A., Klein, Peter S.

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The SMRT and N-CoR Corepressors Are Activating Cofactors for Histone Deacetylase 3 von Guenther, Matthew G., Barak, Orr, Lazar, Mitchell A.

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Evidence that gene activation and silencing during stem cell differentiation requires a transcriptionally paused intermediate state von Golob, Jonathan L, Kumar, Roshan M, Guenther, Matthew G, Pabon, Lil M, Pratt, Gabriel A, Loring, Jeanne F, Laurent, Louise C, Young, Richard A, Murry, Charles E

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Repressive Transcription von Guenther, Matthew G., Young, Richard A.

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