High-resolution TADs reveal DNA sequences underlying genome organization in flies von Ramírez, Fidel, Bhardwaj, Vivek, Arrigoni, Laura, Lam, Kin Chung, Grüning, Björn A., Villaveces, José, Habermann, Bianca, Akhtar, Asifa, Manke, Thomas

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Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization von Wolff, Joachim, Bhardwaj, Vivek, Nothjunge, Stephan, Richard, Gautier, Renschler, Gina, Gilsbach, Ralf, Manke, Thomas, Backofen, Rolf, Ramírez, Fidel, Grüning, Björn A

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BioContainers: an open-source and community-driven framework for software standardization von da Veiga Leprevost, Felipe, Grüning, Björn A, Alves Aflitos, Saulo, Röst, Hannes L, Uszkoreit, Julian, Barsnes, Harald, Vaudel, Marc, Moreno, Pablo, Gatto, Laurent, Weber, Jonas, Bai, Mingze, Jimenez, Rafael C, Sachsenberg, Timo, Pfeuffer, Julianus, Vera Alvarez, Roberto, Griss, Johannes, Nesvizhskii, Alexey I, Perez-Riverol, Yasset

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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo von Gilsbach, Ralf, Schwaderer, Martin, Preissl, Sebastian, Grüning, Björn A., Kranzhöfer, David, Schneider, Pedro, Nührenberg, Thomas G., Mulero-Navarro, Sonia, Weichenhan, Dieter, Braun, Christian, Dreßen, Martina, Jacobs, Adam R., Lahm, Harald, Doenst, Torsten, Backofen, Rolf, Krane, Markus, Gelb, Bruce D., Hein, Lutz

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Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease von Gilsbach, Ralf, Preissl, Sebastian, Grüning, Björn A., Schnick, Tilman, Burger, Lukas, Benes, Vladimir, Würch, Andreas, Bönisch, Ulrike, Günther, Stefan, Backofen, Rolf, Fleischmann, Bernd K., Schübeler, Dirk, Hein, Lutz

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deepTools: a flexible platform for exploring deep-sequencing data von Ramírez, Fidel, Dündar, Friederike, Diehl, Sarah, Grüning, Björn A., Manke, Thomas

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DNA methylation signatures follow preformed chromatin compartments in cardiac myocytes von Nothjunge, Stephan, Nührenberg, Thomas G., Grüning, Björn A., Doppler, Stefanie A., Preissl, Sebastian, Schwaderer, Martin, Rommel, Carolin, Krane, Markus, Hein, Lutz, Gilsbach, Ralf

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Impact of high platelet turnover on the platelet transcriptome: Results from platelet RNA-sequencing in patients with sepsis von Nührenberg, Thomas G, Stöckle, Jasmin, Marini, Federico, Zurek, Mark, Grüning, Björn A, Benes, Vladimir, Hein, Lutz, Neumann, Franz-Josef, Stratz, Christian, Cederqvist, Marco, Hochholzer, Willibald

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Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers von Grüning, Björn A, Rasche, Eric, Rebolledo-Jaramillo, Boris, Eberhard, Carl, Houwaart, Torsten, Chilton, John, Coraor, Nate, Backofen, Rolf, Taylor, James, Nekrutenko, Anton

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Deciphering the Epigenetic Code of Cardiac Myocyte Transcription von Preissl, Sebastian, Schwaderer, Martin, Raulf, Alexandra, Hesse, Michael, Grüning, Björn A, Köbele, Claudia, Backofen, Rolf, Fleischmann, Bernd K, Hein, Lutz, Gilsbach, Ralf

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Regio- and Stereoselective Intermolecular Oxidative Phenol Coupling in Streptomyces von Präg, Andreas, Grüning, Björn A, Häckh, Matthias, Lüdeke, Steffen, Wilde, Marcel, Luzhetskyy, Andriy, Richter, Michael, Luzhetska, Marta, Günther, Stefan, Müller, Michael

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The Purchasable Chemical Space: A Detailed Picture von Lucas, Xavier, Grüning, Björn A, Bleher, Stefan, Günther, Stefan

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DOT1L Activity Promotes Proliferation and Protects Cortical Neural Stem Cells from Activation of ATF4‐DDIT3‐Mediated ER Stress In Vitro von Roidl, Deborah, Hellbach, Nicole, Bovio, Patrick P., Villarreal, Alejandro, Heidrich, Stefanie, Nestel, Sigrun, Grüning, Björn A., Boenisch, Ulrike, Vogel, Tanja

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Fostering accessible online education using Galaxy as an e-learning platform von Serrano-Solano, Beatriz, Föll, Melanie C, Gallardo-Alba, Cristóbal, Erxleben, Anika, Rasche, Helena, Hiltemann, Saskia, Fahrner, Matthias, Dunning, Mark J, Schulz, Marcel H, Scholtz, Beáta, Clements, Dave, Nekrutenko, Anton, Batut, Bérénice, Grüning, Björn A

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The ChemicalToolbox: reproducible, user-friendly cheminformatics analysis on the Galaxy platform von Bray, Simon A., Lucas, Xavier, Kumar, Anup, Grüning, Björn A.

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Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization von Wolff, Joachim, Rabbani, Leily, Gilsbach, Ralf, Richard, Gautier, Manke, Thomas, Backofen, Rolf, Grüning, Björn A

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Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial von Bray, Simon A., Senapathi, Tharindu, Barnett, Christopher B., Grüning, Björn A.

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The omics discovery REST interface von Dass, Gaurhari, Vu, Manh-Tu, Xu, Pan, Audain, Enrique, Hitz, Marc-Phillip, Grüning, Björn A, Hermjakob, Henning, Perez-Riverol, Yasset

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Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology von Cock, Peter J A, Grüning, Björn A, Paszkiewicz, Konrad, Pritchard, Leighton

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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update von Afgan, Enis, Baker, Dannon, Batut, Bérénice, van den Beek, Marius, Bouvier, Dave, Čech, Martin, Chilton, John, Clements, Dave, Coraor, Nate, Grüning, Björn A, Guerler, Aysam, Hillman-Jackson, Jennifer, Hiltemann, Saskia, Jalili, Vahid, Rasche, Helena, Soranzo, Nicola, Goecks, Jeremy, Taylor, James, Nekrutenko, Anton, Blankenberg, Daniel

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